Specifically-expressed experiments

Gene ID	At1g15550
Gene name	GA3OX1 (GIBBERELLIN 3-OXIDASE 1)
Functional description	Involved in later steps of the gibberellic acid biosynthetic pathway. Activated by AGAMOUS in a cal-1, ap1-1 background. Deletion of 208 bp from -1016 to -809 (Δ-808) resulted in loss of GA-negative feedback (this sequence, which contains a 43-bp sequence GNFEI, was shown to be sufficient for GA-negative feedback).

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
191.7	100.0	GSM133311	RIKEN-LI1A	GSE5701	AtGenExpress: Basic hormone treatment of seeds
184.8	100.0	GSM133313	RIKEN-LI2A	GSE5701	AtGenExpress: Basic hormone treatment of seeds
177.9	100.0	GSM133315	RIKEN-LI3A	GSE5701	AtGenExpress: Basic hormone treatment of seeds
161.2	99.9	GSM133314	RIKEN-LI2B	GSE5701	AtGenExpress: Basic hormone treatment of seeds
153.9	99.9	GSM133317	RIKEN-LI4A	GSE5701	AtGenExpress: Basic hormone treatment of seeds
128.3	99.9	ArrayExpress	E-MEXP-849-raw-cel-1181980998	-	-	-
123.3	99.9	GSM133316	RIKEN-LI3B	GSE5701	AtGenExpress: Basic hormone treatment of seeds
121.8	99.9	ArrayExpress	E-MEXP-849-raw-cel-1181980990	-	-	-
115.6	99.9	ArrayExpress	E-MEXP-849-raw-cel-1181980982	-	-	-
103.5	99.9	GSM133312	RIKEN-LI1B	GSE5701	AtGenExpress: Basic hormone treatment of seeds
100.9	99.9	GSM133318	RIKEN-LI4B	GSE5701	AtGenExpress: Basic hormone treatment of seeds
84.0	99.9	GSM133319	RIKEN-LI5A	GSE5701	AtGenExpress: Basic hormone treatment of seeds
81.9	99.9	GSM134315	Penfield_1-17_embryo-PAC_Rep2_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
67.8	99.9	GSM134314	Penfield_1-16_embryo-PAC_Rep1_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
46.0	99.8	GSM134316	Penfield_1-18_embryo-PAC_Rep3_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
37.0	99.7	GSM131454	AtGen_6-9322_Heatstress-Roots-3.0h_Rep2	GSE5628	AtGenExpress: Stress Treatments (Heat stress)
30.6	99.7	GSM133321	RIKEN-LI6A	GSE5701	AtGenExpress: Basic hormone treatment of seeds
30.4	99.7	GSM131453	AtGen_6-9321_Heatstress-Roots-3.0h_Rep1	GSE5628	AtGenExpress: Stress Treatments (Heat stress)
28.7	99.7	GSM133320	RIKEN-LI5B	GSE5701	AtGenExpress: Basic hormone treatment of seeds
27.6	99.7	ArrayExpress	E-MEXP-849-raw-cel-1181981030	-	-	-
22.4	99.6	GSM177127	gid1a-1 gid1b-1 gid1c-2 mock treated for 1 hr, replicate 3	GSE7353	Early GA response genes in Arabidopsis thaliana
21.6	99.6	GSM131449	AtGen_6-9221_Heatstress-Roots-1.0h_Rep1	GSE5628	AtGenExpress: Stress Treatments (Heat stress)
21.0	99.6	GSM131450	AtGen_6-9222_Heatstress-Roots-1.0h_Rep2	GSE5628	AtGenExpress: Stress Treatments (Heat stress)
20.5	99.6	GSM177125	gid1a-1 gid1b-1 gid1c-2 mock treated for 1 hr, replicate 1	GSE7353	Early GA response genes in Arabidopsis thaliana
19.9	99.6	ArrayExpress	E-MEXP-849-raw-cel-1181981006	-	-	-
18.6	99.5	ArrayExpress	E-MEXP-849-raw-cel-1181981038	-	-	-
18.4	99.5	ArrayExpress	E-MEXP-849-raw-cel-1181981014	-	-	-
17.3	99.5	GSM133322	RIKEN-LI6B	GSE5701	AtGenExpress: Basic hormone treatment of seeds
16.8	99.5	GSM177120	ga-1 (SALK_109115) mock treated for 1 hr, replicate 2	GSE7353	Early GA response genes in Arabidopsis thaliana
16.1	99.5	GSM177129	gid1a-1 gid1b-1 gid1c-2 treated for 1 hr with 100 uM GA3, replicate 2	GSE7353	Early GA response genes in Arabidopsis thaliana
15.7	99.5	GSM177130	gid1a-1 gid1b-1 gid1c-2 treated for 1 hr with 100 uM GA3, replicate 3	GSE7353	Early GA response genes in Arabidopsis thaliana
15.5	99.5	GSM133120	RIKEN-YAMAUCHI2B	GSE5687	AtGenExpress: Different temperature treatment of seeds
15.0	99.4	ArrayExpress	E-MEXP-849-raw-cel-1181980854	-	-	-
14.9	99.4	ArrayExpress	E-MEXP-682-raw-cel-922397577	-	-	-
14.7	99.4	GSM177119	ga-1 (SALK_109115) mock treated for 1 hr, replicate 1	GSE7353	Early GA response genes in Arabidopsis thaliana
14.6	99.4	GSM184895	Arabidopsis, root cells, cortex, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
14.4	99.4	ArrayExpress	E-MEXP-682-raw-cel-922397560	-	-	-
14.4	99.4	GSM134514	Col-0_4day_dark_-lincomycin_rep2	GSE5759	red illumination w/o lincomycin
14.1	99.4	GSM177121	ga-1 (SALK_109115) mock treated for 1 hr, replicate 3	GSE7353	Early GA response genes in Arabidopsis thaliana
13.9	99.4	GSM133119	RIKEN-YAMAUCHI2A	GSE5687	AtGenExpress: Different temperature treatment of seeds
13.7	99.4	GSM134305	Penfield_1-7_endosperm-PAC_Rep1_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
13.4	99.4	GSM75508	Col-0 0h NAA replicate 1	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
13.0	99.4	GSM177126	gid1a-1 gid1b-1 gid1c-2 mock treated for 1 hr, replicate 2	GSE7353	Early GA response genes in Arabidopsis thaliana
13.0	99.4	GSM299335	Wild Type Germinating Seeds With Uniconazole Treatment Set 3 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
12.5	99.3	GSM299409	pkl Mutant Germinating Seeds With Uniconazole Treatment Set 5 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
12.5	99.3	ArrayExpress	E-MEXP-849-raw-cel-1181981046	-	-	-
12.3	99.3	GSM184499	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.3	99.3	ArrayExpress	E-MEXP-849-raw-cel-1181980846	-	-	-
12.2	99.3	GSM299408	pkl Mutant Germinating Seeds With Uniconazole Treatment Set 4 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
12.2	99.3	ArrayExpress	E-MEXP-849-raw-cel-1181981022	-	-	-
12.0	99.3	ArrayExpress	E-MEXP-849-raw-cel-1181980838	-	-	-
12.0	99.3	GSM184505	Pericycle root cells 2hr KCl control treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.8	99.3	ArrayExpress	E-MEXP-849-raw-cel-1181980870	-	-	-
11.7	99.3	GSM131465	AtGen_6-9521_Heatstress(3h)+9hrecovery-Roots-12.0h_Rep1	GSE5628	AtGenExpress: Stress Treatments (Heat stress)
11.0	99.2	GSM177128	gid1a-1 gid1b-1 gid1c-2 treated for 1 hr with 100 uM GA3, replicate 1	GSE7353	Early GA response genes in Arabidopsis thaliana
11.0	99.2	GSM184508	Pericycle root cells 2hr transitory KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.7	99.2	GSM184488	Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.5	99.2	GSM75511	Col-0 6h MOCK replicate 1	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
10.4	99.2	GSM299340	pkl Mutant Germinating Seeds With Uniconazole Treatment Set 2 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
10.3	99.2	GSM133823	Walters_A-02-Kruger-WL2_REP2	GSE5737	Carbohydrate- and redox-regulation of gene expression in a TPT mutant
10.2	99.2	ArrayExpress	E-MEXP-1468-raw-cel-1591138688	-	-	-
10.2	99.2	GSM299341	pkl Mutant Germinating Seeds With Uniconazole Treatment Set 3 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
9.9	99.1	ArrayExpress	E-MEXP-1468-raw-cel-1591138754	-	-	-
9.8	99.1	GSM299336	Wild Type Germinating Seeds With Uniconazole Treatment Set 4 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
9.7	99.1	GSM134515	Col-0_4day_dark_+lincomycin_rep1	GSE5759	red illumination w/o lincomycin
9.4	99.1	GSM134516	Col-0_4day_dark_+lincomycin_rep2	GSE5759	red illumination w/o lincomycin
9.3	99.1	GSM299339	pkl Mutant Germinating Seeds With Uniconazole Treatment Set 1 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
9.2	99.1	GSM266669	Arabidopsis, root cells, cortex, -Fe, replicate 1	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
9.2	99.1	GSM299338	Wild Type Germinating Seeds With Uniconazole Treatment Set 6 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
9.1	99.1	GSM299337	Wild Type Germinating Seeds With Uniconazole Treatment Set 5 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
9.0	99.1	GSM216888	ga1-3_shoots_1h_water_repl1	GSE8739	Early gibberellin responses in Arabidopsis
9.0	99.1	GSM299410	pkl Mutant Germinating Seeds With Uniconazole Treatment Set 6 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
8.9	99.0	GSM133140	S1500_4H_B	GSE5688	AtGenExpress: Response to sulfate limitation
8.9	99.0	ArrayExpress	E-MEXP-1468-raw-cel-1591138721	-	-	-
8.7	99.0	GSM226268	WT(Ler)_Dark_replicate2	GSE8951	A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks

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