Specifically-expressed experiments

Gene ID At1g09530
Gene name PIF3 (PHYTOCHROME INTERACTING FACTOR 3)
Functional description Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
57.399.8ArrayExpressE-MEXP-475-raw-cel-680982449---
38.599.8ArrayExpressE-MEXP-475-raw-cel-680982503---
38.099.8GSM131303AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
28.499.7GSM268249dor-drought-2, biological rep 2GSE10643Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.Link to GEO
27.999.7ArrayExpressE-MEXP-715-raw-cel-1121836361---
27.799.7GSM152145siz1-3 drought 3GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
27.799.7GSM152141siz1-3 drought 1GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
26.599.7ArrayExpressE-MEXP-715-raw-cel-1121836247---
26.299.7ArrayExpressE-MEXP-715-raw-cel-1121836005---
25.999.7ArrayExpressE-MEXP-715-raw-cel-1121835979---
24.299.6ArrayExpressE-MEXP-1304-raw-cel-1530618068---
23.399.6GSM131304AtGen_6-2612_Osmoticstress-Shoots-24.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
22.999.6GSM152143siz1-3 drought 2GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
21.299.6ArrayExpressE-MEXP-1468-raw-cel-1591138985---
20.999.6ArrayExpressE-MEXP-1468-raw-cel-1591139018---
20.299.6ArrayExpressE-MEXP-715-raw-cel-1121836087---
20.299.6GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
20.099.6ArrayExpressE-MEXP-1304-raw-cel-1530618235---
19.699.6GSM282699Col_BRZ_rep3GSE11216Brassinazole treatment of arf2 and wild-type dark-grown seedlingsLink to GEO
19.399.6GSM282698Col_BRZ_rep2GSE11216Brassinazole treatment of arf2 and wild-type dark-grown seedlingsLink to GEO
19.099.5ArrayExpressE-MEXP-1304-raw-cel-1530618275---
19.099.5GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
18.499.5GSM131299AtGen_6-2511_Osmoticstress-Shoots-12.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
18.299.5GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
18.299.5GSM282703arf2_brz_2GSE11216Brassinazole treatment of arf2 and wild-type dark-grown seedlingsLink to GEO
18.199.5GSM9612axr3-1_+IAA_2GSE629Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutantsLink to GEO
18.099.5ArrayExpressE-MEXP-715-raw-cel-1121836113---
17.899.5GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
17.599.5ArrayExpressE-MEXP-715-raw-cel-1121836334---
17.599.5GSM131190AtGen_D-23_2-UL_REP2_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
17.499.5ArrayExpressE-MEXP-1304-raw-cel-1530618136---
17.299.5ArrayExpressE-MEXP-1725-raw-cel-1669614613---
16.999.5GSM9613axr3-1_+IAA_3GSE629Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutantsLink to GEO
16.799.5ArrayExpressE-MEXP-1304-raw-cel-1530618171---
16.499.5GSM133261RIKEN-GODA2A-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlingsLink to GEO
16.399.5GSM282697Col_BRZ_rep1GSE11216Brassinazole treatment of arf2 and wild-type dark-grown seedlingsLink to GEO
16.199.5GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
16.099.5GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
15.999.5GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
15.799.5GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
15.699.5GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
15.399.4GSM269821WT leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stressLink to GEO
15.299.4ArrayExpressE-MEXP-475-raw-cel-680982377---
15.199.4GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
14.899.4ArrayExpressE-MEXP-791-raw-cel-1122937569---
14.399.4GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
14.199.4GSM133727McCormac_1-5_wildtype-Contrl_Rep2_ATH1GSE5726Seedling transcriptome affected by Norflurazon-induced photobleaching of chloroplastsLink to GEO
13.999.4GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.799.4ArrayExpressE-MEXP-1725-raw-cel-1669614603---
13.799.4GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.699.4ArrayExpressE-MEXP-475-raw-cel-680982521---
13.699.4ArrayExpressE-MEXP-1094-raw-cel-1379507433---
13.699.4ArrayExpressE-MEXP-1468-raw-cel-1591138655---
13.699.4GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.399.4GSM131189AtGen_D-22_2-AL_REP2_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
13.299.4GSM319208Dark-grown WT control (vector#1) GSE12729Microarray analysis of MINI ZINC FINGER 1 (MIF1) overexpression transgenic Arabidopsis seedlingsLink to GEO
13.199.4GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.199.4ArrayExpressE-MEXP-475-raw-cel-680982485---
13.099.4ArrayExpressE-MEXP-1468-raw-cel-1591138853---
12.999.3ArrayExpressE-MEXP-1304-raw-cel-1530618003---
12.999.3GSM282693arf2_brz_1GSE11216Brassinazole treatment of arf2 and wild-type dark-grown seedlingsLink to GEO
12.799.3GSM269825T8 leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stressLink to GEO
12.699.3GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
12.699.3GSM156792control rep2GSE6788Expression data of an albino mutant DS 13-2198-1Link to GEO
12.599.3GSM152139Col-0 drought 3GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
12.499.3ArrayExpressE-MEXP-1094-raw-cel-1379507473---
12.499.3ArrayExpressE-MEXP-475-raw-cel-680982413---
12.399.3GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
12.399.3GSM134514Col-0_4day_dark_-lincomycin_rep2GSE5759red illumination w/o lincomycinLink to GEO
12.199.3GSM9628Col_+IAA_A2_3GSE630Auxin-mediated gene expressionLink to GEO
12.099.3GSM152135Col-0 drought 1GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
11.999.3GSM131300AtGen_6-2512_Osmoticstress-Shoots-12.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
11.999.3ArrayExpressE-MEXP-1304-raw-cel-1530618104---
11.999.3GSM311266Ws seedlings, biological rep1GSE12401Transcript abundance data from seedlings of wild-type Ws and ged1 (greening after extended darkness 1) mutantLink to GEO
11.699.3GSM9611axr3-1_+IAA_1GSE629Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutantsLink to GEO
11.599.3GSM133259RIKEN-GODA1A-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlingsLink to GEO
11.499.3ArrayExpressE-MEXP-1304-raw-cel-1530617935---
11.399.3GSM282700Col_mock_rep1GSE11216Brassinazole treatment of arf2 and wild-type dark-grown seedlingsLink to GEO
11.299.2ArrayExpressE-NASC-78-raw-cel-1463195219---
11.299.2GSM157364Ulker_2-7_WT-Col-0-L-Pst-DC3000_Rep1_ATH1GSE6829Group II-A WRKY transcription factors and early leaf senescenceLink to GEO
11.199.2ArrayExpressE-MEXP-1725-raw-cel-1669614592---
11.099.2GSM131186AtGen_D-19_2-PL_REP2_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
10.999.2GSM128676Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
10.999.2GSM128677Underwood_1-30_DC3000-10e8-7h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
10.999.2ArrayExpressE-MEXP-715-raw-cel-1121836221---
10.899.2ArrayExpressE-MEXP-1304-raw-cel-1530618033---
10.699.2ArrayExpressE-MEXP-1468-raw-cel-1591138886---
10.699.2ArrayExpressE-MEXP-1468-raw-cel-1591138688---
10.499.2ArrayExpressE-MEXP-791-raw-cel-1122937533---
10.499.2ArrayExpressE-NASC-78-raw-cel-1463195187---
10.399.2GSM131175AtGen_D-7_1-UL_REP1_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
10.399.2ArrayExpressE-MEXP-1094-raw-cel-1379507193---
10.399.2GSM74897Wildtype_3H Cold_Rep2GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive TranscriptomeLink to GEO
10.299.2GSM128662Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
10.299.2ArrayExpressE-MEXP-475-raw-cel-680982332---
10.199.2GSM133724McCormac_1-2_wildtype-Contrl_Rep1_ATH1GSE5726Seedling transcriptome affected by Norflurazon-induced photobleaching of chloroplastsLink to GEO
10.099.2GSM319209Dark-grown WT control (vector#4) GSE12729Microarray analysis of MINI ZINC FINGER 1 (MIF1) overexpression transgenic Arabidopsis seedlingsLink to GEO
9.999.1GSM9599Col_+IAA_I_2GSE629Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutantsLink to GEO
9.999.1GSM134515Col-0_4day_dark_+lincomycin_rep1GSE5759red illumination w/o lincomycinLink to GEO
9.999.1ArrayExpressE-MEXP-475-raw-cel-680982341---
9.899.1GSM131205AtGen_D-39_3-UL_REP3_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
9.799.1GSM9605iaa17-6_+IAA_1GSE629Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutantsLink to GEO
9.799.1ArrayExpressE-MEXP-475-raw-cel-680982323---
9.699.1GSM9630arf2-6_+IAA_1GSE630Auxin-mediated gene expressionLink to GEO
9.599.1ArrayExpressE-MEXP-1468-raw-cel-1591138952---
9.599.1GSM269831T6 leaf-drought-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stressLink to GEO
9.299.1GSM152137Col-0 drought 2GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
8.999.0GSM133260RIKEN-GODA1B-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlingsLink to GEO
8.999.0GSM9634arf2-6_+IAA_3GSE630Auxin-mediated gene expressionLink to GEO
8.899.0GSM131188AtGen_D-21_2-BL_REP2_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
8.799.0ArrayExpressE-MEXP-1304-raw-cel-1530617971---
8.699.0ArrayExpressE-MEXP-1299-raw-cel-1519903848---
8.699.0ArrayExpressE-MEXP-1468-raw-cel-1591138754---



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