Specifically-expressed experiments

Gene ID	At1g02340
Gene name	HFR1 (LONG HYPOCOTYL IN FAR-RED)
Functional description	Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
124.1	99.9	ArrayExpress	E-MEXP-1112-raw-cel-1590665845	-	-	-
120.3	99.9	ArrayExpress	E-MEXP-1112-raw-cel-1590665429	-	-	-
115.0	99.9	ArrayExpress	E-MEXP-1112-raw-cel-1590665273	-	-	-
99.7	99.9	ArrayExpress	E-MEXP-1112-raw-cel-1590665689	-	-	-
98.8	99.9	ArrayExpress	E-MEXP-1112-raw-cel-1590665793	-	-	-
85.5	99.9	ArrayExpress	E-MEXP-1112-raw-cel-1590665377	-	-	-
84.5	99.9	ArrayExpress	E-MEXP-1112-raw-cel-1590665741	-	-	-
75.8	99.9	ArrayExpress	E-MEXP-1112-raw-cel-1590665325	-	-	-
58.5	99.8	ArrayExpress	E-MEXP-1299-raw-cel-1519903848	-	-	-
56.0	99.8	GSM131170	AtGen_D-2_1-FL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
53.2	99.8	GSM131200	AtGen_D-34_3-FL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
50.6	99.8	GSM131176	AtGen_D-8_1-WL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
49.6	99.8	GSM131169	AtGen_D-1_1-DL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
48.2	99.8	GSM131185	AtGen_D-18_2-FL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
46.6	99.8	GSM131173	AtGen_D-5_1-BL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
46.5	99.8	GSM131180	AtGen_D-12_1-RS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
45.2	99.8	GSM131212	AtGen_D-46_3-AS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
44.9	99.8	GSM142827	PJ002_ATH1_A8-jarvis-B1798	GSE6175	Clarification of the genetic basis of the iae1 and iae2 phenotypes
44.4	99.8	GSM131199	AtGen_D-33_3-DL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
44.3	99.8	ArrayExpress	E-MEXP-443-raw-cel-669122963	-	-	-
43.2	99.8	GSM131203	AtGen_D-37_3-BL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
43.0	99.8	GSM131196	AtGen_D-30_2-AS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
42.7	99.8	GSM131181	AtGen_D-13_1-BS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
42.0	99.8	GSM131208	AtGen_D-42_3-FS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
41.3	99.8	GSM131178	AtGen_D-10_1-FS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
40.5	99.8	GSM131182	AtGen_D-14_1-AS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
40.4	99.8	GSM131179	AtGen_D-11_1-PS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
39.0	99.8	ArrayExpress	E-MEXP-443-raw-cel-669122954	-	-	-
38.7	99.8	GSM131210	AtGen_D-44_3-RS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
37.7	99.7	GSM131216	AtGen_D-26_1-FS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
37.7	99.7	GSM131215	AtGen_D-17_2-DL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
36.9	99.7	ArrayExpress	E-MEXP-1299-raw-cel-1519903415	-	-	-
34.7	99.7	GSM131171	AtGen_D-3_1-PL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
34.6	99.7	GSM131198	AtGen_D-32_2-WS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
33.5	99.7	GSM131183	AtGen_D-15_1-US_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
33.1	99.7	GSM131207	AtGen_D-41_3-DS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
32.8	99.7	ArrayExpress	E-MEXP-285-raw-cel-440782853	-	-	-
32.7	99.7	GSM131188	AtGen_D-21_2-BL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
32.7	99.7	GSM282693	arf2_brz_1	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
32.6	99.7	GSM131177	AtGen_D-9_1-DS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
32.6	99.7	GSM253165	48h into an extended nightB	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
32.1	99.7	GSM131193	AtGen_D-27_2-PS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
32.1	99.7	GSM131191	AtGen_D-24_2-WL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
31.6	99.7	GSM131184	AtGen_D-16_1-WS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
31.3	99.7	GSM282699	Col_BRZ_rep3	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
30.8	99.7	GSM131206	AtGen_D-40_3-WL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
30.7	99.7	GSM131202	AtGen_D-36_3-RL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
30.5	99.7	GSM131214	AtGen_D-48_3-WS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
29.4	99.7	GSM131197	AtGen_D-31_2-US_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
28.3	99.7	GSM282703	arf2_brz_2	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
28.2	99.7	GSM142821	PJ002_ATH1_A2-jarvis-iae1	GSE6175	Clarification of the genetic basis of the iae1 and iae2 phenotypes
28.2	99.7	GSM131195	AtGen_D-29_2-BS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
28.0	99.7	GSM142826	PJ002_ATH1_A7-jarvis-B1798	GSE6175	Clarification of the genetic basis of the iae1 and iae2 phenotypes
28.0	99.7	GSM292076	Wt, dark sample, biological rep1	GSE11594	Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
27.9	99.7	GSM131194	AtGen_D-28_2-RS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
27.9	99.7	GSM131175	AtGen_D-7_1-UL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
27.6	99.7	GSM131174	AtGen_D-6_1-AL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
27.6	99.7	GSM253166	48h into an extended nightC	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
26.6	99.7	GSM131186	AtGen_D-19_2-PL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
26.6	99.7	GSM282701	Col_mock_rep2	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
26.3	99.7	GSM131204	AtGen_D-38_3-AL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
26.1	99.7	ArrayExpress	E-MEXP-1608-raw-cel-1620687021	-	-	-
25.9	99.7	GSM282698	Col_BRZ_rep2	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
25.4	99.6	GSM282695	arf2_mock_rep2	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
25.4	99.6	GSM282697	Col_BRZ_rep1	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
24.6	99.6	GSM131211	AtGen_D-45_3-BS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
24.5	99.6	GSM131192	AtGen_D-25_2-DS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
24.4	99.6	GSM131209	AtGen_D-43_3-PS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
23.6	99.6	GSM131172	AtGen_D-4_1-RL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
23.4	99.6	ArrayExpress	E-NASC-78-raw-cel-1463195171	-	-	-
23.3	99.6	GSM142828	PJ002_ATH1_A9-jarvis-B1798	GSE6175	Clarification of the genetic basis of the iae1 and iae2 phenotypes
22.9	99.6	ArrayExpress	E-MEXP-1094-raw-cel-1379507353	-	-	-
21.9	99.6	ArrayExpress	E-MEXP-1299-raw-cel-1519903496	-	-	-
21.7	99.6	ArrayExpress	E-MEXP-1608-raw-cel-1620686957	-	-	-
21.3	99.6	GSM131205	AtGen_D-39_3-UL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
21.2	99.6	ArrayExpress	E-TABM-52-raw-cel-1583683630	-	-	-
20.2	99.6	GSM142820	PJ002_ATH1_A1-jarvis-iae1	GSE6175	Clarification of the genetic basis of the iae1 and iae2 phenotypes
20.0	99.6	GSM142822	PJ002_ATH1_A3-jarvis-iae1	GSE6175	Clarification of the genetic basis of the iae1 and iae2 phenotypes
19.9	99.6	GSM134513	Col-0_4day_dark_-lincomycin_rep1	GSE5759	red illumination w/o lincomycin
19.8	99.6	GSM142773	AM002_ATH1_A8-MCCOR-GDB	GSE6169	Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
19.7	99.6	ArrayExpress	E-NASC-78-raw-cel-1463195187	-	-	-
19.6	99.6	GSM319205	35S-MIF1 line #124, dark grown, replicate1	GSE12729	Microarray analysis of MINI ZINC FINGER 1 (MIF1) overexpression transgenic Arabidopsis seedlings
19.1	99.6	ArrayExpress	E-MEXP-1608-raw-cel-1620686965	-	-	-
18.8	99.5	GSM282702	Col_mock_rep3	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
18.8	99.5	GSM319209	Dark-grown WT control (vector#4)	GSE12729	Microarray analysis of MINI ZINC FINGER 1 (MIF1) overexpression transgenic Arabidopsis seedlings
18.8	99.5	ArrayExpress	E-TABM-52-raw-cel-1583683342	-	-	-
18.7	99.5	GSM245918	wild type dark replicate 3	GSE9728	COP9 signalosome (csn) mutant analysis
18.6	99.5	GSM282694	arf2_mock_rep1	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
17.7	99.5	GSM282700	Col_mock_rep1	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
17.5	99.5	GSM128809	Mukhtar_1-1_XVE-SALK_Rep1_ATH1	GSE5537	Targets of AtWRKY27 in Arabidopsis leaves
17.1	99.5	GSM131189	AtGen_D-22_2-AL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
17.0	99.5	GSM292079	pif1-2, dark sample, biological rep1	GSE11594	Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
16.8	99.5	ArrayExpress	E-NASC-78-raw-cel-1463195203	-	-	-
16.7	99.5	ArrayExpress	E-NASC-78-raw-cel-1463195251	-	-	-
16.7	99.5	GSM134514	Col-0_4day_dark_-lincomycin_rep2	GSE5759	red illumination w/o lincomycin
16.6	99.5	ArrayExpress	E-MEXP-1299-raw-cel-1519903746	-	-	-
16.5	99.5	GSM282696	arf2_mock_rep3	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
16.4	99.5	GSM128810	Mukhtar_1-2_XVE-ETL_Rep1_ATH1	GSE5537	Targets of AtWRKY27 in Arabidopsis leaves
16.4	99.5	GSM131187	AtGen_D-20_2-RL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
16.2	99.5	GSM226268	WT(Ler)_Dark_replicate2	GSE8951	A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
16.1	99.5	GSM245916	wild type dark replicate 1	GSE9728	COP9 signalosome (csn) mutant analysis
15.5	99.5	ArrayExpress	E-NASC-78-raw-cel-1463195283	-	-	-
15.5	99.5	GSM142823	PJ002_ATH1_A4-jarvis-iae2	GSE6175	Clarification of the genetic basis of the iae1 and iae2 phenotypes
15.5	99.5	ArrayExpress	E-NASC-78-raw-cel-1463195235	-	-	-
14.8	99.4	GSM142825	PJ002_ATH1_A6-jarvis-iae2	GSE6175	Clarification of the genetic basis of the iae1 and iae2 phenotypes
14.5	99.4	GSM131213	AtGen_D-47_3-US_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
14.2	99.4	ArrayExpress	E-MEXP-1112-raw-cel-1590665481	-	-	-
13.7	99.4	GSM142824	PJ002_ATH1_A5-jarvis-iae2	GSE6175	Clarification of the genetic basis of the iae1 and iae2 phenotypes
13.6	99.4	GSM253163	24h into an extended nightB	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
13.4	99.4	GSM226272	phyAphyB_Dark_replicate3	GSE8951	A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
12.8	99.3	ArrayExpress	E-MEXP-443-raw-cel-669122945	-	-	-
12.3	99.3	GSM226271	phyAphyB_Dark_replicate2	GSE8951	A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
12.2	99.3	GSM253164	24h into an extended nightC	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
12.2	99.3	GSM292081	pif1-2, dark sample, biological rep3	GSE11594	Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
12.1	99.3	GSM134775	Col-0_5day_+lincomycin_rep1	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
12.1	99.3	ArrayExpress	E-MEXP-1608-raw-cel-1620686997	-	-	-
12.0	99.3	ArrayExpress	E-MEXP-1112-raw-cel-1590665897	-	-	-
11.8	99.3	GSM128812	Mukhtar_1-4_WK27-XVE-ETL_Rep1_ATH1	GSE5537	Targets of AtWRKY27 in Arabidopsis leaves
11.4	99.3	ArrayExpress	E-MEXP-1468-raw-cel-1591138919	-	-	-
11.4	99.3	GSM142774	AM002_ATH1_A9-MCCOR-AFA	GSE6169	Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
11.0	99.2	ArrayExpress	E-MEXP-1468-raw-cel-1591138952	-	-	-
10.7	99.2	ArrayExpress	E-MEXP-1112-raw-cel-1590665533	-	-	-
10.4	99.2	GSM134516	Col-0_4day_dark_+lincomycin_rep2	GSE5759	red illumination w/o lincomycin
10.4	99.2	ArrayExpress	E-MEXP-444-raw-cel-670291526	-	-	-
10.4	99.2	GSM134517	Col-0_4day_red illumination_-lincomycin_rep1	GSE5759	red illumination w/o lincomycin
10.3	99.2	GSM292077	Wt, dark sample, biological rep2	GSE11594	Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
9.9	99.1	GSM134518	Col-0_4day_red illumination_-lincomycin_rep2	GSE5759	red illumination w/o lincomycin
9.8	99.1	GSM292080	pif1-2, dark sample, biological rep2	GSE11594	Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
9.8	99.1	GSM226270	phyAphyB_Dark_replicate1	GSE8951	A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
9.8	99.1	ArrayExpress	E-NASC-78-raw-cel-1463195219	-	-	-
9.6	99.1	ArrayExpress	E-MEXP-1304-raw-cel-1530620422	-	-	-
9.5	99.1	GSM134519	Col-0_4day_red illumination_+lincomycin_rep1	GSE5759	red illumination w/o lincomycin
9.3	99.1	ArrayExpress	E-MEXP-1112-raw-cel-1590665949	-	-	-
9.3	99.1	GSM134520	Col-0_4day_red illumination _+lincomycin_rep2	GSE5759	red illumination w/o lincomycin
9.1	99.1	GSM131190	AtGen_D-23_2-UL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
9.0	99.1	GSM245917	wild type dark replicate 2	GSE9728	COP9 signalosome (csn) mutant analysis
8.9	99.0	GSM142775	AM002_ATH1_A10-MCCOR-ADA	GSE6169	Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
8.9	99.0	GSM173447	oxt6 mutant, biological rep3	GSE7211	A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
8.9	99.0	GSM131588	ATGE_35_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
8.8	99.0	GSM94008	A1-1 second repeat	GSE4113	Arabidopsis plants with altered levels of alternative oxidase
8.8	99.0	GSM131589	ATGE_35_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
8.7	99.0	ArrayExpress	E-MEXP-285-raw-cel-440782938	-	-	-

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