Specifically-expressed experiments

Gene ID	At1g01060
Gene name	LHY (LATE ELONGATED HYPOCOTYL)
Functional description	LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
159.7	99.9	ArrayExpress	E-MEXP-1299-raw-cel-1519902498	-	-	-
97.2	99.9	ArrayExpress	E-MEXP-1299-raw-cel-1519902871	-	-	-
92.7	99.9	ArrayExpress	E-MEXP-1299-raw-cel-1519902780	-	-	-
80.5	99.9	ArrayExpress	E-MEXP-1299-raw-cel-1519902558	-	-	-
76.9	99.9	ArrayExpress	E-MEXP-1299-raw-cel-1519902698	-	-	-
72.8	99.9	ArrayExpress	E-MEXP-1299-raw-cel-1519902620	-	-	-
37.1	99.7	GSM318331	EL_14DAS_2	GSE12676	Arabidopsis thaliana Ler developmental series
36.4	99.7	GSM317624	Apex_14DAS_2	GSE12676	Arabidopsis thaliana Ler developmental series
32.6	99.7	ArrayExpress	E-MEXP-513-raw-cel-829814366	-	-	-
32.2	99.7	GSM318622	Apex_mir-319b_17DAS_1	GSE12691	Knockdown and overexpression of CIN-TCP genes
31.7	99.7	GSM142814	SS002_ATH1_A6-smith-12h	GSE6174	Gene expression and carbohydrate metabolism through the diurnal cycle
29.6	99.7	ArrayExpress	E-MEXP-513-raw-cel-829814398	-	-	-
28.8	99.7	GSM183506	WT_for_MYB29/76_rep3	GSE7570	ATR1_like_Clade_OE_and_miR
28.2	99.7	GSM183504	WT_for_MYB29/76_rep1	GSE7570	ATR1_like_Clade_OE_and_miR
26.8	99.7	GSM317519	Apex_5DAS_1	GSE12676	Arabidopsis thaliana Ler developmental series
26.7	99.7	GSM318620	Apex_mir-3TCP_14DAS_1	GSE12691	Knockdown and overexpression of CIN-TCP genes
26.7	99.7	GSM297382	At.StarchSD.WTSS3.SS3R1L1	GSE11708	Global gene expression in Atss3 mutant and WT over short day diurnal cycle
25.2	99.6	ArrayExpress	E-MEXP-1304-raw-cel-1530618308	-	-	-
25.2	99.6	GSM318624	Apex_octa_18DAS_1	GSE12691	Knockdown and overexpression of CIN-TCP genes
24.9	99.6	GSM245238	0hr DEX Replicate 3	GSE9702	Identification of putative targets of AP3/PI
24.7	99.6	GSM142803	SS001_ATH1_A6-Smith-8-45	GSE6174	Gene expression and carbohydrate metabolism through the diurnal cycle
24.6	99.6	GSM318618	Apex_Col_14DAS_1	GSE12691	Knockdown and overexpression of CIN-TCP genes
23.9	99.6	ArrayExpress	E-MEXP-513-raw-cel-829814414	-	-	-
23.8	99.6	ArrayExpress	E-MEXP-513-raw-cel-829814382	-	-	-
23.6	99.6	GSM142804	SS001_ATH1_A7-Smith-10	GSE6174	Gene expression and carbohydrate metabolism through the diurnal cycle
23.4	99.6	GSM62700	arf6/arf6 ARF8/arf8 flowers_stage 13-14	GSE2848	Auxin Response Factor mediated flower gene expression
23.4	99.6	GSM134772	Col-0_5day_-lincomycin_rep1	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
22.5	99.6	ArrayExpress	E-MEXP-1304-raw-cel-1530618514	-	-	-
22.5	99.6	GSM253155	end of the night B	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
22.1	99.6	GSM134774	Col-0_5day_-lincomycin_rep2	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
21.1	99.6	GSM318625	Apex_octa_18DAS_2	GSE12691	Knockdown and overexpression of CIN-TCP genes
20.8	99.6	ArrayExpress	E-MEXP-1443-raw-cel-1581869515	-	-	-
20.7	99.6	GSM142815	SS002_ATH1_A7-smith-13h	GSE6174	Gene expression and carbohydrate metabolism through the diurnal cycle
20.5	99.6	GSM318621	Apex_mir-3TCP_14DAS_2	GSE12691	Knockdown and overexpression of CIN-TCP genes
20.5	99.6	GSM77057	00h Col-0 replicate C	GSE3416	Diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves
20.4	99.6	ArrayExpress	E-MEXP-849-raw-cel-1181980894	-	-	-
20.0	99.6	GSM318627	Apex_BLS>>TCP4_14DAS_2	GSE12691	Knockdown and overexpression of CIN-TCP genes
19.9	99.6	GSM253156	end of the night C	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
19.9	99.6	ArrayExpress	E-MEXP-849-raw-cel-1181980910	-	-	-
19.0	99.5	GSM77055	00h Col-0 replicate A	GSE3416	Diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves
18.6	99.5	GSM142805	SS001_ATH1_A8-Smith-11	GSE6174	Gene expression and carbohydrate metabolism through the diurnal cycle
18.5	99.5	ArrayExpress	E-MEXP-185-raw-cel-358911830	-	-	-
18.4	99.5	ArrayExpress	E-MEXP-849-raw-cel-1181980942	-	-	-
18.1	99.5	ArrayExpress	E-MEXP-1443-raw-cel-1581869573	-	-	-
17.7	99.5	ArrayExpress	E-MEXP-185-raw-cel-358911718	-	-	-
17.6	99.5	GSM297392	At.StarchSD.WTSS3.WTR1L1	GSE11708	Global gene expression in Atss3 mutant and WT over short day diurnal cycle
17.6	99.5	GSM183514	MYB29_OE_rep2	GSE7570	ATR1_like_Clade_OE_and_miR
17.1	99.5	GSM134782	gun1-1_5day_+lincomycin_rep1	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
17.1	99.5	GSM128775	Eulgem_1-1_Col-0-untreated_Rep1_AG	GSE5532	Responses to overexpression of wild type and constitutively active Arabidopsis MAP Kinase Kinase 2
17.0	99.5	GSM134775	Col-0_5day_+lincomycin_rep1	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
17.0	99.5	ArrayExpress	E-MEXP-1304-raw-cel-1530618724	-	-	-
17.0	99.5	ArrayExpress	E-MEXP-1299-raw-cel-1519901036	-	-	-
17.0	99.5	GSM77056	00h Col-0 replicate B	GSE3416	Diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves
16.6	99.5	ArrayExpress	E-MEXP-185-raw-cel-358912110	-	-	-
16.6	99.5	ArrayExpress	E-MEXP-185-raw-cel-358911606	-	-	-
16.3	99.5	GSM253157	2h into an extended night	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
16.2	99.5	GSM142663	NE001_ATH1_A1-Evans-w20	GSE6154	Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis
16.2	99.5	ArrayExpress	E-MEXP-185-raw-cel-358912054	-	-	-
16.0	99.5	GSM253154	end of the night A	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
15.9	99.5	ArrayExpress	E-MEXP-1304-raw-cel-1530619897	-	-	-
15.8	99.5	GSM142666	NE001_ATH1_A4-Evans-m20	GSE6154	Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis
15.5	99.5	ArrayExpress	E-MEXP-185-raw-cel-358911998	-	-	-
15.4	99.5	ArrayExpress	E-MEXP-185-raw-cel-358911662	-	-	-
15.4	99.5	ArrayExpress	E-MEXP-1304-raw-cel-1530620422	-	-	-
15.2	99.4	ArrayExpress	E-MEXP-1304-raw-cel-1530620221	-	-	-
15.1	99.4	GSM128776	Eulgem_1-3_Col-0-MKK2-w.t.4_Rep1_AG	GSE5532	Responses to overexpression of wild type and constitutively active Arabidopsis MAP Kinase Kinase 2
14.4	99.4	GSM197142	aba3-1_2 with array type ATH1 from Affymetrix	GSE7961	affy_aba_ath1-Characterization of aba3-1 suppressor mutants
14.2	99.4	GSM184153	35S:MYB28_like_miR_rep1	GSE7570	ATR1_like_Clade_OE_and_miR
14.0	99.4	ArrayExpress	E-MEXP-1304-raw-cel-1530620040	-	-	-
14.0	99.4	GSM297387	At.StarchSD.WTSS3.SS3R2L1	GSE11708	Global gene expression in Atss3 mutant and WT over short day diurnal cycle
14.0	99.4	ArrayExpress	E-MEXP-849-raw-cel-1181980966	-	-	-
13.9	99.4	GSM128733	Hennig_1-5_flowers-CK_021114_2_B_Rep2_ATH1	GSE5526	Transcriptional Programs of Early Reproductive Stages in Arabidopsis
13.9	99.4	ArrayExpress	E-MEXP-1304-raw-cel-1530619513	-	-	-
13.7	99.4	GSM131168	AtGen_C-18_3-Pi-24_REP3_ATH1	GSE5616	AtGenExpress: Response to Phytophthora infestans
13.6	99.4	ArrayExpress	E-MEXP-849-raw-cel-1181980838	-	-	-
13.5	99.4	GSM134771	abi4-102_5day_+lincomycin_rep2	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
13.4	99.4	GSM77182	00h pgm (Col-0) mutant replicate B	GSE3424	Diurnal gene expression in rosette leaves of the phosphoglucomutase mutant (Col-0)
13.3	99.4	GSM318619	Apex_Col_14DAS_2	GSE12691	Knockdown and overexpression of CIN-TCP genes
13.3	99.4	ArrayExpress	E-MEXP-1304-raw-cel-1530619115	-	-	-
13.2	99.4	ArrayExpress	E-ATMX-19-raw-cel-1375547394	-	-	-
13.2	99.4	ArrayExpress	E-MEXP-849-raw-cel-1181980902	-	-	-
13.2	99.4	GSM197143	S14-150_2 with array type ATH1 from Affymetrix	GSE7961	affy_aba_ath1-Characterization of aba3-1 suppressor mutants
13.0	99.4	GSM62705	arf6 arf8_stem	GSE2848	Auxin Response Factor mediated flower gene expression
13.0	99.4	GSM134779	gun1-1_5day_-lincomycin_rep1	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
12.9	99.3	ArrayExpress	E-MEXP-849-raw-cel-1181980950	-	-	-
12.8	99.3	GSM142642	MC002_ATH1_A7.2-dubos-wLh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
12.5	99.3	ArrayExpress	E-MEXP-185-raw-cel-358911774	-	-	-
12.4	99.3	GSM142816	SS002_ATH1_A8-smith-14h	GSE6174	Gene expression and carbohydrate metabolism through the diurnal cycle
12.4	99.3	ArrayExpress	E-MEXP-185-raw-cel-358911942	-	-	-
12.3	99.3	GSM226275	YHB_Dark_replicate3	GSE8951	A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
12.3	99.3	GSM77181	00h pgm (Col-0) mutant replicate A	GSE3424	Diurnal gene expression in rosette leaves of the phosphoglucomutase mutant (Col-0)
12.3	99.3	GSM134783	gun1-1_5day_+lincomycin_rep2	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
12.2	99.3	GSM197141	wt_2 with array type ATH1 from Affymetrix	GSE7961	affy_aba_ath1-Characterization of aba3-1 suppressor mutants
12.0	99.3	GSM318332	ML_35DAS_1	GSE12676	Arabidopsis thaliana Ler developmental series
11.9	99.3	GSM318623	Apex_mir-319b_17DAS_2	GSE12691	Knockdown and overexpression of CIN-TCP genes
11.9	99.3	GSM62703	arf6 arf8 flowers_stage 11-12	GSE2848	Auxin Response Factor mediated flower gene expression
11.9	99.3	ArrayExpress	E-MEXP-185-raw-cel-358911886	-	-	-
11.8	99.3	GSM134777	Col-0_5day_+lincomycin_rep2	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
11.8	99.3	GSM318345	ML_35DAS_2	GSE12676	Arabidopsis thaliana Ler developmental series
11.6	99.3	GSM131158	AtGen_C-8_2-C-24_REP2_ATH1	GSE5616	AtGenExpress: Response to Phytophthora infestans
11.5	99.3	GSM244443	Arabidopsis wild-type_T0 (not inoculated)_biological rep2_exp2	GSE9674	Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
11.4	99.3	ArrayExpress	E-MEXP-1094-raw-cel-1379507353	-	-	-
11.3	99.3	GSM131157	AtGen_C-7_1-C-24_REP1_ATH1	GSE5616	AtGenExpress: Response to Phytophthora infestans
10.9	99.2	GSM253153	2h before the end of the night	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
10.8	99.2	ArrayExpress	E-ATMX-24-raw-cel-1441078286	-	-	-
10.7	99.2	GSM197146	S82-2_2 with array type ATH1 from Affymetrix	GSE7961	affy_aba_ath1-Characterization of aba3-1 suppressor mutants
10.7	99.2	GSM94010	Wild type third repeat	GSE4113	Arabidopsis plants with altered levels of alternative oxidase
10.7	99.2	GSM318626	Apex_BLS>>TCP4_14DAS_1	GSE12691	Knockdown and overexpression of CIN-TCP genes
10.6	99.2	GSM237293	Shoot control rep2	GSE9311	Gene expression in roots and shoots of plants grown on selenate
10.4	99.2	GSM253159	4h into an extended nightB	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
10.3	99.2	GSM134780	gun1-1_5day_-lincomycin_rep2	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
10.2	99.2	ArrayExpress	E-MEXP-849-raw-cel-1181980878	-	-	-
10.2	99.2	GSM184152	35S:ATR1_like_miR_rep2	GSE7570	ATR1_like_Clade_OE_and_miR
10.2	99.2	GSM245473	9 hr Non-Stress IP RNA Rep 1	GSE9719	Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
10.1	99.2	ArrayExpress	E-MEXP-682-raw-cel-922397645	-	-	-
10.0	99.2	GSM142643	MC002_ATH1_A7.3-dubos-wLh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
10.0	99.2	GSM237295	Shoot Selenate rep2	GSE9311	Gene expression in roots and shoots of plants grown on selenate
10.0	99.2	GSM237294	Shoot Selenate rep1	GSE9311	Gene expression in roots and shoots of plants grown on selenate
9.9	99.1	GSM27360	WT Rosette Leaf	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
9.9	99.1	GSM184151	ATR1_OE_rep2	GSE7570	ATR1_like_Clade_OE_and_miR
9.7	99.1	GSM131159	AtGen_C-9_3-C-24_REP3_ATH1	GSE5616	AtGenExpress: Response to Phytophthora infestans
9.7	99.1	ArrayExpress	E-ATMX-19-raw-cel-1375547411	-	-	-
9.6	99.1	GSM134767	abi4-102_5day_-lincomycin_rep1	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
9.6	99.1	ArrayExpress	E-MEXP-791-raw-cel-1122937551	-	-	-
9.6	99.1	GSM62702	arf6 arf8 flowers_stage 1-10	GSE2848	Auxin Response Factor mediated flower gene expression
9.4	99.1	ArrayExpress	E-MEXP-1304-raw-cel-1530618924	-	-	-
9.4	99.1	GSM142624	MC002_ATH1_A1.2-dubos-wtx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.2	99.1	GSM131541	ATGE_26_B	GSE5630	AtGenExpress: Developmental series (leaves)
9.1	99.1	GSM62704	arf6 arf8 flowers_stage 13-14	GSE2848	Auxin Response Factor mediated flower gene expression
9.0	99.1	GSM131166	AtGen_C-16_1-Pi-24_REP1_ATH1	GSE5616	AtGenExpress: Response to Phytophthora infestans
8.9	99.0	GSM297397	At.StarchSD.WTSS3.WTR2L1	GSE11708	Global gene expression in Atss3 mutant and WT over short day diurnal cycle
8.9	99.0	ArrayExpress	E-MEXP-791-raw-cel-1122937560	-	-	-
8.9	99.0	ArrayExpress	E-MEXP-1304-raw-cel-1530619702	-	-	-
8.9	99.0	GSM131772	Quick_A100_1-96hr_Rep4_ATH1	GSE5636	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
8.8	99.0	GSM226274	YHB_Dark_replicate2	GSE8951	A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
8.7	99.0	GSM131760	Quick_A48_1-96hr_Rep2_ATH1	GSE5636	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
8.7	99.0	ArrayExpress	E-ATMX-24-raw-cel-1441078321	-	-	-
8.6	99.0	GSM245468	9 hr Non-Stress Total RNA Rep 1	GSE9719	Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation

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