Specifically-expressed experiments

Gene ID At1g01060
Gene name LHY (LATE ELONGATED HYPOCOTYL)
Functional description LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
159.799.9ArrayExpressE-MEXP-1299-raw-cel-1519902498---
97.299.9ArrayExpressE-MEXP-1299-raw-cel-1519902871---
92.799.9ArrayExpressE-MEXP-1299-raw-cel-1519902780---
80.599.9ArrayExpressE-MEXP-1299-raw-cel-1519902558---
76.999.9ArrayExpressE-MEXP-1299-raw-cel-1519902698---
72.899.9ArrayExpressE-MEXP-1299-raw-cel-1519902620---
37.199.7GSM318331EL_14DAS_2GSE12676Arabidopsis thaliana Ler developmental seriesLink to GEO
36.499.7GSM317624Apex_14DAS_2GSE12676Arabidopsis thaliana Ler developmental seriesLink to GEO
32.699.7ArrayExpressE-MEXP-513-raw-cel-829814366---
32.299.7GSM318622Apex_mir-319b_17DAS_1GSE12691Knockdown and overexpression of CIN-TCP genesLink to GEO
31.799.7GSM142814SS002_ATH1_A6-smith-12hGSE6174Gene expression and carbohydrate metabolism through the diurnal cycleLink to GEO
29.699.7ArrayExpressE-MEXP-513-raw-cel-829814398---
28.899.7GSM183506WT_for_MYB29/76_rep3GSE7570ATR1_like_Clade_OE_and_miRLink to GEO
28.299.7GSM183504WT_for_MYB29/76_rep1GSE7570ATR1_like_Clade_OE_and_miRLink to GEO
26.899.7GSM317519Apex_5DAS_1GSE12676Arabidopsis thaliana Ler developmental seriesLink to GEO
26.799.7GSM318620Apex_mir-3TCP_14DAS_1GSE12691Knockdown and overexpression of CIN-TCP genesLink to GEO
26.799.7GSM297382At.StarchSD.WTSS3.SS3R1L1GSE11708Global gene expression in Atss3 mutant and WT over short day diurnal cycleLink to GEO
25.299.6ArrayExpressE-MEXP-1304-raw-cel-1530618308---
25.299.6GSM318624Apex_octa_18DAS_1GSE12691Knockdown and overexpression of CIN-TCP genesLink to GEO
24.999.6GSM2452380hr DEX Replicate 3GSE9702Identification of putative targets of AP3/PILink to GEO
24.799.6GSM142803SS001_ATH1_A6-Smith-8-45GSE6174Gene expression and carbohydrate metabolism through the diurnal cycleLink to GEO
24.699.6GSM318618Apex_Col_14DAS_1GSE12691Knockdown and overexpression of CIN-TCP genesLink to GEO
23.999.6ArrayExpressE-MEXP-513-raw-cel-829814414---
23.899.6ArrayExpressE-MEXP-513-raw-cel-829814382---
23.699.6GSM142804SS001_ATH1_A7-Smith-10GSE6174Gene expression and carbohydrate metabolism through the diurnal cycleLink to GEO
23.499.6GSM62700arf6/arf6 ARF8/arf8 flowers_stage 13-14GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
23.499.6GSM134772Col-0_5day_-lincomycin_rep1GSE5770col0,gun1,abi4-102, w/wo lincomycinLink to GEO
22.599.6ArrayExpressE-MEXP-1304-raw-cel-1530618514---
22.599.6GSM253155end of the night BGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
22.199.6GSM134774Col-0_5day_-lincomycin_rep2GSE5770col0,gun1,abi4-102, w/wo lincomycinLink to GEO
21.199.6GSM318625Apex_octa_18DAS_2GSE12691Knockdown and overexpression of CIN-TCP genesLink to GEO
20.899.6ArrayExpressE-MEXP-1443-raw-cel-1581869515---
20.799.6GSM142815SS002_ATH1_A7-smith-13hGSE6174Gene expression and carbohydrate metabolism through the diurnal cycleLink to GEO
20.599.6GSM318621Apex_mir-3TCP_14DAS_2GSE12691Knockdown and overexpression of CIN-TCP genesLink to GEO
20.599.6GSM7705700h Col-0 replicate CGSE3416Diurnal gene expression in Arabidopsis thaliana Col-0 rosette leavesLink to GEO
20.499.6ArrayExpressE-MEXP-849-raw-cel-1181980894---
20.099.6GSM318627Apex_BLS>>TCP4_14DAS_2GSE12691Knockdown and overexpression of CIN-TCP genesLink to GEO
19.999.6GSM253156end of the night CGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
19.999.6ArrayExpressE-MEXP-849-raw-cel-1181980910---
19.099.5GSM7705500h Col-0 replicate AGSE3416Diurnal gene expression in Arabidopsis thaliana Col-0 rosette leavesLink to GEO
18.699.5GSM142805SS001_ATH1_A8-Smith-11GSE6174Gene expression and carbohydrate metabolism through the diurnal cycleLink to GEO
18.599.5ArrayExpressE-MEXP-185-raw-cel-358911830---
18.499.5ArrayExpressE-MEXP-849-raw-cel-1181980942---
18.199.5ArrayExpressE-MEXP-1443-raw-cel-1581869573---
17.799.5ArrayExpressE-MEXP-185-raw-cel-358911718---
17.699.5GSM297392At.StarchSD.WTSS3.WTR1L1GSE11708Global gene expression in Atss3 mutant and WT over short day diurnal cycleLink to GEO
17.699.5GSM183514MYB29_OE_rep2GSE7570ATR1_like_Clade_OE_and_miRLink to GEO
17.199.5GSM134782gun1-1_5day_+lincomycin_rep1GSE5770col0,gun1,abi4-102, w/wo lincomycinLink to GEO
17.199.5GSM128775Eulgem_1-1_Col-0-untreated_Rep1_AGGSE5532Responses to overexpression of wild type and constitutively active Arabidopsis MAP Kinase Kinase 2Link to GEO
17.099.5GSM134775Col-0_5day_+lincomycin_rep1GSE5770col0,gun1,abi4-102, w/wo lincomycinLink to GEO
17.099.5ArrayExpressE-MEXP-1304-raw-cel-1530618724---
17.099.5ArrayExpressE-MEXP-1299-raw-cel-1519901036---
17.099.5GSM7705600h Col-0 replicate BGSE3416Diurnal gene expression in Arabidopsis thaliana Col-0 rosette leavesLink to GEO
16.699.5ArrayExpressE-MEXP-185-raw-cel-358912110---
16.699.5ArrayExpressE-MEXP-185-raw-cel-358911606---
16.399.5GSM2531572h into an extended nightGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
16.299.5GSM142663NE001_ATH1_A1-Evans-w20GSE6154Molecular basis of respiratory burst-mediated thermotolerance in ArabidopsisLink to GEO
16.299.5ArrayExpressE-MEXP-185-raw-cel-358912054---
16.099.5GSM253154end of the night AGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
15.999.5ArrayExpressE-MEXP-1304-raw-cel-1530619897---
15.899.5GSM142666NE001_ATH1_A4-Evans-m20GSE6154Molecular basis of respiratory burst-mediated thermotolerance in ArabidopsisLink to GEO
15.599.5ArrayExpressE-MEXP-185-raw-cel-358911998---
15.499.5ArrayExpressE-MEXP-185-raw-cel-358911662---
15.499.5ArrayExpressE-MEXP-1304-raw-cel-1530620422---
15.299.4ArrayExpressE-MEXP-1304-raw-cel-1530620221---
15.199.4GSM128776Eulgem_1-3_Col-0-MKK2-w.t.4_Rep1_AGGSE5532Responses to overexpression of wild type and constitutively active Arabidopsis MAP Kinase Kinase 2Link to GEO
14.499.4GSM197142aba3-1_2 with array type ATH1 from AffymetrixGSE7961affy_aba_ath1-Characterization of aba3-1 suppressor mutantsLink to GEO
14.299.4GSM18415335S:MYB28_like_miR_rep1GSE7570ATR1_like_Clade_OE_and_miRLink to GEO
14.099.4ArrayExpressE-MEXP-1304-raw-cel-1530620040---
14.099.4GSM297387At.StarchSD.WTSS3.SS3R2L1GSE11708Global gene expression in Atss3 mutant and WT over short day diurnal cycleLink to GEO
14.099.4ArrayExpressE-MEXP-849-raw-cel-1181980966---
13.999.4GSM128733Hennig_1-5_flowers-CK_021114_2_B_Rep2_ATH1GSE5526Transcriptional Programs of Early Reproductive Stages in ArabidopsisLink to GEO
13.999.4ArrayExpressE-MEXP-1304-raw-cel-1530619513---
13.799.4GSM131168AtGen_C-18_3-Pi-24_REP3_ATH1GSE5616AtGenExpress: Response to Phytophthora infestansLink to GEO
13.699.4ArrayExpressE-MEXP-849-raw-cel-1181980838---
13.599.4GSM134771abi4-102_5day_+lincomycin_rep2GSE5770col0,gun1,abi4-102, w/wo lincomycinLink to GEO
13.499.4GSM7718200h pgm (Col-0) mutant replicate BGSE3424Diurnal gene expression in rosette leaves of the phosphoglucomutase mutant (Col-0)Link to GEO
13.399.4GSM318619Apex_Col_14DAS_2GSE12691Knockdown and overexpression of CIN-TCP genesLink to GEO
13.399.4ArrayExpressE-MEXP-1304-raw-cel-1530619115---
13.299.4ArrayExpressE-ATMX-19-raw-cel-1375547394---
13.299.4ArrayExpressE-MEXP-849-raw-cel-1181980902---
13.299.4GSM197143S14-150_2 with array type ATH1 from AffymetrixGSE7961affy_aba_ath1-Characterization of aba3-1 suppressor mutantsLink to GEO
13.099.4GSM62705arf6 arf8_stemGSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
13.099.4GSM134779gun1-1_5day_-lincomycin_rep1GSE5770col0,gun1,abi4-102, w/wo lincomycinLink to GEO
12.999.3ArrayExpressE-MEXP-849-raw-cel-1181980950---
12.899.3GSM142642MC002_ATH1_A7.2-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
12.599.3ArrayExpressE-MEXP-185-raw-cel-358911774---
12.499.3GSM142816SS002_ATH1_A8-smith-14hGSE6174Gene expression and carbohydrate metabolism through the diurnal cycleLink to GEO
12.499.3ArrayExpressE-MEXP-185-raw-cel-358911942---
12.399.3GSM226275YHB_Dark_replicate3GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networksLink to GEO
12.399.3GSM7718100h pgm (Col-0) mutant replicate AGSE3424Diurnal gene expression in rosette leaves of the phosphoglucomutase mutant (Col-0)Link to GEO
12.399.3GSM134783gun1-1_5day_+lincomycin_rep2GSE5770col0,gun1,abi4-102, w/wo lincomycinLink to GEO
12.299.3GSM197141wt_2 with array type ATH1 from AffymetrixGSE7961affy_aba_ath1-Characterization of aba3-1 suppressor mutantsLink to GEO
12.099.3GSM318332ML_35DAS_1GSE12676Arabidopsis thaliana Ler developmental seriesLink to GEO
11.999.3GSM318623Apex_mir-319b_17DAS_2GSE12691Knockdown and overexpression of CIN-TCP genesLink to GEO
11.999.3GSM62703arf6 arf8 flowers_stage 11-12GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
11.999.3ArrayExpressE-MEXP-185-raw-cel-358911886---
11.899.3GSM134777Col-0_5day_+lincomycin_rep2GSE5770col0,gun1,abi4-102, w/wo lincomycinLink to GEO
11.899.3GSM318345ML_35DAS_2GSE12676Arabidopsis thaliana Ler developmental seriesLink to GEO
11.699.3GSM131158AtGen_C-8_2-C-24_REP2_ATH1GSE5616AtGenExpress: Response to Phytophthora infestansLink to GEO
11.599.3GSM244443Arabidopsis wild-type_T0 (not inoculated)_biological rep2_exp2GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepointsLink to GEO
11.499.3ArrayExpressE-MEXP-1094-raw-cel-1379507353---
11.399.3GSM131157AtGen_C-7_1-C-24_REP1_ATH1GSE5616AtGenExpress: Response to Phytophthora infestansLink to GEO
10.999.2GSM2531532h before the end of the nightGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
10.899.2ArrayExpressE-ATMX-24-raw-cel-1441078286---
10.799.2GSM197146S82-2_2 with array type ATH1 from AffymetrixGSE7961affy_aba_ath1-Characterization of aba3-1 suppressor mutantsLink to GEO
10.799.2GSM94010Wild type third repeatGSE4113Arabidopsis plants with altered levels of alternative oxidaseLink to GEO
10.799.2GSM318626Apex_BLS>>TCP4_14DAS_1GSE12691Knockdown and overexpression of CIN-TCP genesLink to GEO
10.699.2GSM237293Shoot control rep2GSE9311Gene expression in roots and shoots of plants grown on selenateLink to GEO
10.499.2GSM2531594h into an extended nightBGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
10.399.2GSM134780gun1-1_5day_-lincomycin_rep2GSE5770col0,gun1,abi4-102, w/wo lincomycinLink to GEO
10.299.2ArrayExpressE-MEXP-849-raw-cel-1181980878---
10.299.2GSM18415235S:ATR1_like_miR_rep2GSE7570ATR1_like_Clade_OE_and_miRLink to GEO
10.299.2GSM2454739 hr Non-Stress IP RNA Rep 1GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenationLink to GEO
10.199.2ArrayExpressE-MEXP-682-raw-cel-922397645---
10.099.2GSM142643MC002_ATH1_A7.3-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
10.099.2GSM237295Shoot Selenate rep2GSE9311Gene expression in roots and shoots of plants grown on selenateLink to GEO
10.099.2GSM237294Shoot Selenate rep1GSE9311Gene expression in roots and shoots of plants grown on selenateLink to GEO
9.999.1GSM27360WT Rosette LeafGSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
9.999.1GSM184151ATR1_OE_rep2GSE7570ATR1_like_Clade_OE_and_miRLink to GEO
9.799.1GSM131159AtGen_C-9_3-C-24_REP3_ATH1GSE5616AtGenExpress: Response to Phytophthora infestansLink to GEO
9.799.1ArrayExpressE-ATMX-19-raw-cel-1375547411---
9.699.1GSM134767abi4-102_5day_-lincomycin_rep1GSE5770col0,gun1,abi4-102, w/wo lincomycinLink to GEO
9.699.1ArrayExpressE-MEXP-791-raw-cel-1122937551---
9.699.1GSM62702arf6 arf8 flowers_stage 1-10GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
9.499.1ArrayExpressE-MEXP-1304-raw-cel-1530618924---
9.499.1GSM142624MC002_ATH1_A1.2-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
9.299.1GSM131541ATGE_26_BGSE5630AtGenExpress: Developmental series (leaves)Link to GEO
9.199.1GSM62704arf6 arf8 flowers_stage 13-14GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
9.099.1GSM131166AtGen_C-16_1-Pi-24_REP1_ATH1GSE5616AtGenExpress: Response to Phytophthora infestansLink to GEO
8.999.0GSM297397At.StarchSD.WTSS3.WTR2L1GSE11708Global gene expression in Atss3 mutant and WT over short day diurnal cycleLink to GEO
8.999.0ArrayExpressE-MEXP-791-raw-cel-1122937560---
8.999.0ArrayExpressE-MEXP-1304-raw-cel-1530619702---
8.999.0GSM131772Quick_A100_1-96hr_Rep4_ATH1GSE5636Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)Link to GEO
8.899.0GSM226274YHB_Dark_replicate2GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networksLink to GEO
8.799.0GSM131760Quick_A48_1-96hr_Rep2_ATH1GSE5636Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)Link to GEO
8.799.0ArrayExpressE-ATMX-24-raw-cel-1441078321---
8.699.0GSM2454689 hr Non-Stress Total RNA Rep 1GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenationLink to GEO



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