CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID rbasd21g03_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.95 99.2 rbasd21g03_s_at rbasd21g03 - - 8e+0 At4g39900 unknown protein S.X. H.G.
0.36 47.1 Contig12120_at Contig12120 - - 3e-25 At5g51280 DEAD-box protein abstrakt, putative S.X. H.G.
0.25 28.9 Contig24881_s_at Contig24881 - - 5e-2 At1g75340 zinc finger (CCCH-type) family protein S.X. H.G.
0.22 24.2 Contig7152_at Contig7152 - - 2e-34 At3g58600 - S.X. H.G.
0.18 18.2 Contig7044_at Contig7044 - - 4e-3 At5g42090 - S.X. H.G.
0.17 16.9 Contig4647_at Contig4647 - - 3e-3 At2g37990 ribosome biogenesis regulatory protein (RRS1) family protein S.X. H.G.
0.13 11.6 Contig4131_at Contig4131 - - 2e-23 At1g77490 TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE) S.X. H.G.
0.11 9.4 Contig4722_at Contig4722 - - 5e-21 At5g41010 NRPB12 S.X. H.G.
0.09 7.4 Contig7360_at Contig7360 - - 3e+0 At4g19620 unknown protein S.X. H.G.
0.04 3.4 Contig19935_at Contig19935 - - 2e-6 At3g58000 VQ motif-containing protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.1 98.9 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.8 97.8 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.5 96.7 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.4 96.6 GSM161148 7% SWC rep3 GSE6990 Barley drought stress
4.3 96.4 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.7 95.5 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.6 95.3 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
3.5 95.1 GSM419977 Palea_Rep3 GSE16754 Comparative transcriptional profiling of organs of the barley spike
3.5 95.1 GSM440965 Control palea_Rep3 GSE17669 Gene expression in the barley spike during drought stress
3.4 94.8 GSM419976 Palea_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.50 7e-119 424 Contig4172_at Contig4172 - - 2e-2 At3g52090 NRPB11 C.G. S.X.
0.03 3e-4 44 Contig4171_at Contig4171 - - 1e-1 At3g52090 NRPB11 C.G. S.X.
0.03 2e-1 34 Contig12653_at Contig12653 - - 6e-3 At3g13460 ECT2 C.G. S.X.
0.03 9e-1 32 Contig7418_at Contig7418 - - 7e-12 At5g56940 ribosomal protein S16 family protein C.G. S.X.
0.04 9e-1 32 Contig18150_at Contig18150 - - 1e+0 At1g02750 zinc ion binding C.G. S.X.
0.01 9e-1 32 Contig13726_at Contig13726 - - 1e+0 At1g80780 CCR4-NOT transcription complex protein, putative C.G. S.X.
0.02 9e-1 32 Contig13615_at Contig13615 - - 1e-5 At4g15120 VQ motif-containing protein C.G. S.X.
0.04 4e+0 30 HT12F20u_at HT12F20u - - 4e+0 At3g54020 phosphatidic acid phosphatase-related / PAP2-related C.G. S.X.
0.04 4e+0 30 Contig8240_s_at Contig8240 - - 5e+0 At4g12825 - C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e+0 30 Arabidopsis thaliana At4g39900 830149 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.04 1e+1 30 Glycine max HgAffx.8873.1.S1_at CB379628 - - 1e+0 At3g03280 unknown protein C.G. S.X.
0.08 1e-3 44 Oryza sativa Os07g0172500 AK068132.1 - DNA-directed RNA polymerase II 13.6 kDapolypeptide (EC 2.7.7.6) 2e+0 At3g52090 NRPB11 C.G. S.X.
0.05 3e+0 32 Populus trichocarpa PtpAffx.205172.1.S1_at pmrna10239 hypothetical protein - 3e+0 At4g36610 hydrolase, alpha/beta fold family protein C.G. S.X.
0.25 1e-20 99 Triticum aestivum Ta.864.3.S1_x_at CK151715 - - 2e+0 At1g72940 disease resistance protein (TIR-NBS class), putative C.G. S.X.
0.04 6e-1 32 Vitis vinifera 1613674_at CK138160.1 hypothetical protein LOC100261822 - 1e-25 At1g72730 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative C.G. S.X.
0.05 8e-1 32 Zea mays Zm.4460.1.A1_at AI714963 hypothetical protein LOC100278019 - 5e+0 At5g62520 SRO5 (SIMILAR TO RCD ONE 5) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage