CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID rbah59f07_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 84.7 rbah59f07_s_at rbah59f07 - - 4e+0 At3g24160 PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN) S.X. H.G.
0.91 98.1 Contig24657_at Contig24657 - - 2e-2 At5g18940 Mo25 family protein S.X. H.G.
0.86 94.8 Contig2990_at Contig2990 - - 1e-4 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) S.X. H.G.
0.82 93.1 rbaal22l07_s_at rbaal22l07 vacuolar ATPase B subunit - 1e-1 At3g44100 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein S.X. H.G.
0.78 91.2 HVSMEg0011K10r2_x_at HVSMEg0011K10r2 - - 3e+0 At2g30695 - S.X. H.G.
0.78 91.2 Contig3659_at Contig3659 - - 3e-7 At4g29060 emb2726 (embryo defective 2726) S.X. H.G.
0.67 84.7 HD13H12r_s_at HD13H12r - - 2e-1 At3g28710 H+-transporting two-sector ATPase, putative S.X. H.G.
0.64 80.9 Contig682_s_at Contig682 - - 9e-13 At3g10410 scpl49 (serine carboxypeptidase-like 49) S.X. H.G.
0.63 80.3 Contig30_s_at Contig30 - - 4e-19 At5g59690 histone H4 S.X. H.G.
0.61 78.7 Contig3558_s_at Contig3558 - - 2e-15 At1g24510 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.8 95.7 GSM440968 Stressed palea_Rep3 GSE17669 Gene expression in the barley spike during drought stress
3.7 95.5 GSM440960 Stressed lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
3.3 94.6 GSM419975 Palea_Rep1 GSE16754 Comparative transcriptional profiling of organs of the barley spike
3.3 94.6 GSM440963 Control palea_Rep1 GSE17669 Gene expression in the barley spike during drought stress
3.2 94.3 GSM440972 Stressed awn_Rep1 GSE17669 Gene expression in the barley spike during drought stress
3.0 93.8 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
2.9 93.4 GSM440962 Stressed lemma_Rep3 GSE17669 Gene expression in the barley spike during drought stress
2.8 93.1 GSM261034 Dicktoo-chilling-rep2 GSE10329 Low temperature stress in cv. Dicktoo
2.7 92.7 GSM419974 Lemma_Rep3 GSE16754 Comparative transcriptional profiling of organs of the barley spike
2.7 92.7 GSM440959 Control lemma_Rep3 GSE17669 Gene expression in the barley spike during drought stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.48 0 712 Contig4857_at Contig4857 - - 2e-1 At2g36610 ATHB22 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22) C.G. S.X.
0.03 5e-1 34 Contig8377_at Contig8377 - - 2e+0 At2g48130 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 5e-1 34 Contig19877_at Contig19877 - - 6e+0 At5g40370 glutaredoxin, putative C.G. S.X.
0.02 2e+0 32 Contig5186_at Contig5186 - - 1e-25 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) C.G. S.X.
0.02 2e+0 32 Contig4392_at Contig4392 - - 5e-8 At3g17940 aldose 1-epimerase family protein C.G. S.X.
0.02 2e+0 32 Contig12574_at Contig12574 - - 2e+0 At4g16100 unknown protein C.G. S.X.
0.01 2e+0 32 Contig7814_at Contig7814 - - 1e-3 At4g11560 bromo-adjacent homology (BAH) domain-containing protein C.G. S.X.
0.04 2e+0 32 rbah38o04_s_at rbah38o04 - - 1e+0 At3g57072 unknown protein C.G. S.X.
0.02 8e+0 30 Contig23870_s_at Contig23870 - - 2e-1 At1g56430 NAS4 (NICOTIANAMINE SYNTHASE 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e+0 32 Arabidopsis thaliana At3g24160 822002 PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN) Encodes a putative Type 1 membrane protein (PMP). - - - C.G. S.X.
0.07 2e-9 63 Glycine max Gma.7259.2.S1_a_at BQ610944 - - 7e+0 At5g45428 CPuORF24 (Conserved peptide upstream open reading frame 24) C.G. S.X.
0.11 1e-23 111 Oryza sativa Os08g0567000 AK065186.1 - Conserved hypothetical protein 3e+0 At5g43410 ethylene-responsive factor, putative C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.40357.2.S1_a_at BU889608 hypothetical protein - 8e-1 At4g09720 Ras-related GTP-binding protein, putative C.G. S.X.
0.59 1e-120 432 Triticum aestivum Ta.9195.1.A1_at BJ287416 - - 2e+0 At1g78630 emb1473 (embryo defective 1473) C.G. S.X.
0.03 8e-2 36 Vitis vinifera 1615169_at BQ792970 hypothetical protein LOC100258290 - 3e-1 At3g14280 unknown protein C.G. S.X.
0.12 9e-24 109 Zea mays Zm.8507.1.A1_at BM074458 hypothetical protein LOC100276220 - 8e-1 At4g20280 TAF11 (TBP-ASSOCIATED FACTOR 11) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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