Gene omics information

Query gene ID	rbah36l17_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	rbah36l17_s_at	rbah36l17	-	-	7e-30	At1g30580	GTP binding	S.X.	H.G.	Please select
0.67	84.7	Contig5361_at	Contig5361	-	-	3e+0	At4g29103	unknown protein	S.X.	H.G.	Please select
0.53	69.7	Contig642_at	Contig642	-	-	4e-5	At4g08930	ATAPRL6 (APR-like 6)	S.X.	H.G.	Please select
0.44	58.9	Contig6751_at	Contig6751	-	-	1e+0	At3g04990	-	S.X.	H.G.	Please select
0.21	22.6	Contig5893_at	Contig5893	-	-	1e-52	At1g04170	EIF2 GAMMA	S.X.	H.G.	Please select
0.20	21.1	Contig326_x_at	Contig326	-	-	0	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.3	98.1	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1	96.2	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.0	96.0	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.57	0	1277	Contig3606_at	Contig3606	-	-	8e-32	At1g30580	GTP binding	C.G.	S.X.	Please select
0.02	6e-1	34	Contig9569_at	Contig9569	-	-	4e-2	At3g30845	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig6183_at	Contig6183	-	-	2e-4	At3g17590	BSH (BUSHY GROWTH)	C.G.	S.X.	Please select
0.03	3e+0	32	HVSMEc0014L06f_x_at	HVSMEc0014L06f	-	-	3e+0	At4g11640	ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE)	C.G.	S.X.	Please select
0.03	3e+0	32	HVSMEc0014L06f_s_at	HVSMEc0014L06f	-	-	3e+0	At4g11640	ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig8708_at	Contig8708	-	-	2e-1	At5g50790	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.03	3e+0	32	Contig4779_s_at	Contig4779	-	-	2e-8	At3g53710	AGD6	C.G.	S.X.	Please select
0.02	3e+0	32	Contig17417_at	Contig17417	-	-	4e-1	At3g58630	transcription factor	C.G.	S.X.	Please select
0.01	3e+0	32	Contig4777_at	Contig4777	-	-	4e-37	At5g46570	BSK2 (BR-SIGNALING KINASE 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	7e-30	131	Arabidopsis thaliana	At1g30580	839938	GTP binding	F:GTP binding;P:response to cadmium ion;C:intracellular;OBMFAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	1e-38	161	Glycine max	Gma.2708.1.S1_at	AW350781	-	-	1e-82	At1g30580	GTP binding	C.G.	S.X.	Please select
0.28	1e-104	381	Oryza sativa	Os08g0199300	AK062256.1	-	GTP-binding protein	2e-26	At1g30580	GTP binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.34	1e-41	171	Populus trichocarpa	Ptp.1845.1.A1_at	CV256202	hypothetical protein	-	4e-47	At1g30580	GTP binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.53	0	728	Triticum aestivum	Ta.2982.1.S1_a_at	AY135021.1	GTP-binding protein	-	3e-37	At1g30580	GTP binding	C.G.	S.X.	Please select
0.24	2e-27	121	Vitis vinifera	1620593_at	BQ797219	hypothetical protein LOC100252659	-	1e-97	At1g30580	GTP binding	C.G.	S.X.	Please select
0.29	2e-111	400	Zea mays	Zm.968.1.A1_at	CF623311	GTP-binding protein PTD004	-	5e-27	At1g30580	GTP binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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