Gene omics information

Query gene ID	rbags5f04_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.47	62.2	rbags5f04_s_at	rbags5f04	-	-	2e+0	At3g61678	unknown protein	S.X.	H.G.	Please select
0.91	98.1	HF01J12w_s_at	HF01J12w	-	-	4e-1	At2g32310	-	S.X.	H.G.	Please select
0.91	98.1	Contig3337_s_at	Contig3337	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	S.X.	H.G.	Please select
0.83	94.0	Contig5153_at	Contig5153	chloroplast inner envelope protein-like	-	3e+0	At5g46860	VAM3	S.X.	H.G.	Please select
0.80	92.5	Contig2776_at	Contig2776	-	-	5e-20	At3g22890	APS1 (ATP SULFURYLASE 1)	S.X.	H.G.	Please select
0.35	45.1	Contig8498_at	Contig8498	-	-	6e-8	At4g36390	radical SAM domain-containing protein / TRAM domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.7	95.5	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6	95.3	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM261026	ABA-Early-rep3	GSE10328	ABA experiment
2.9	93.4	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM261062	Xantha s-46 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7	92.7	GSM261039	Dicktoo-deacclimation-rep1	GSE10329	Low temperature stress in cv. Dicktoo

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	1e-147	519	rbags5f04_at	rbags5f04	-	-	2e+0	At3g61678	unknown protein	C.G.	S.X.	Please select
0.19	4e-108	389	Contig3330_at	Contig3330	-	-	2e-91	At5g50920	CLPC1	C.G.	S.X.	Please select
0.57	1e-98	357	Contig3331_at	Contig3331	-	-	4e+0	At3g61678	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	34	Contig9380_at	Contig9380	-	-	4e-5	At2g33620	DNA-binding family protein / AT-hook protein 1 (AHP1)	C.G.	S.X.	Please select
0.02	2e-1	34	Contig18000_at	Contig18000	knotted 1	-	1e-33	At1g62360	STM (SHOOT MERISTEMLESS)	C.G.	S.X.	Please select
0.03	2e-1	34	Contig6555_s_at	Contig6555	-	-	2e+0	At1g15370	-	C.G.	S.X.	Please select
0.03	2e-1	34	Contig13291_s_at	Contig13291	-	-	5e-1	At2g30340	LBD13 (LOB DOMAIN-CONTAINING PROTEIN 13)	C.G.	S.X.	Please select
0.04	2e-1	34	HS16N24u_at	HS16N24u	-	-	4e+0	At5g67110	ALC (ALCATRAZ)	C.G.	S.X.	Please select
0.02	2e-1	34	Contig12814_at	Contig12814	-	-	4e-2	At4g10925	F-box family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e+0	32	Arabidopsis thaliana	At3g61678	6240667	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-1	36	Glycine max	HgAffx.21586.1.S1_at	BI748167	-	-	8e-1	At2g04039	unknown protein	C.G.	S.X.	Please select
0.08	1e+0	34	Oryza sativa	OsAffx.28608.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	7e-1	34	Populus trichocarpa	PtpAffx.30973.1.S1_at	CV254257	hypothetical protein	-	4e-4	At5g24580	copper-binding family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	1e-35	149	Triticum aestivum	Ta.1705.1.S1_x_at	CK205709	-	-	3e-84	At5g50920	CLPC1	C.G.	S.X.	Please select
0.07	6e-1	32	Vitis vinifera	1622069_at	CD801772	-	-	2e+0	At1g74340	dolichol phosphate-mannose biosynthesis regulatory protein-related	C.G.	S.X.	Please select
0.04	3e+0	30	Zea mays	Zm.6476.1.A1_at	BG266009	hypothetical protein LOC100275764	-	2e+1	At3g48231	LCR48 (Low-molecular-weight cysteine-rich 48)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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