CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID rbags23g22_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 88.7 rbags23g22_at rbags23g22 - - 5e+0 At5g16880 VHS domain-containing protein / GAT domain-containing protein S.X. H.G.
0.44 58.9 Contig24327_at Contig24327 - - 2e+0 At2g32470 F-box family protein-related S.X. H.G.
0.31 38.6 Contig21303_at Contig21303 - - 2e+0 At2g14890 AGP9 (ARABINOGALACTAN PROTEIN 9) S.X. H.G.
0.08 6.5 Contig1644_at Contig1644 - - 7e-13 At4g03280 PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C) S.X. H.G.
0.08 6.5 HVSMEg0017M01r2_at HVSMEg0017M01r2 - - 5e+0 At5g53120 SPDS3 (SPERMIDINE SYNTHASE 3) S.X. H.G.
0.03 2.6 Contig6328_at Contig6328 - - 9e-21 At3g52560 UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.6 99.6 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
12.3 99.4 GSM372955 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.1 99.2 GSM372967 genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.7 99.0 GSM372966 genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.2 99.0 GSM372952 genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.3 98.8 GSM372971 genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.1 98.7 GSM372965 genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.8 98.6 GSM372963 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.7 98.6 GSM372968 genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.6 98.6 GSM68893 3 h salt stressed replicate 2 GSE3097 Barley1 salinity stress study
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.77 0 704 Contig24322_at Contig24322 - - 5e+0 At2g04425 LCR82 (Low-molecular-weight cysteine-rich 82) C.G. S.X.
0.03 2e-1 36 Contig22289_at Contig22289 - - 6e+0 At5g03455 CDC25 C.G. S.X.
0.03 6e-1 34 Contig22513_at Contig22513 - - 3e-16 At1g11390 ABC1 family protein C.G. S.X.
0.02 6e-1 34 Contig14267_at Contig14267 - - 6e-1 At2g23430 ICK1 C.G. S.X.
0.02 2e+0 32 Contig17881_at Contig17881 - - 4e-1 At4g17580 Bax inhibitor-1 family protein / BI-1 family protein C.G. S.X.
0.03 2e+0 32 HX08E06r_at HX08E06r - - 1e+0 At3g58350 meprin and TRAF homology domain-containing protein / MATH domain-containing protein C.G. S.X.
0.03 2e+0 32 Contig12631_at Contig12631 - - 4e+0 At1g66520 pde194 (pigment defective 194) C.G. S.X.
0.02 2e+0 32 Contig23330_at Contig23330 - - 5e-1 At1g49475 DNA binding / transcription factor C.G. S.X.
0.02 2e+0 32 Contig13251_at Contig13251 - - 1e-2 At3g58290 meprin and TRAF homology domain-containing protein / MATH domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e+0 32 Arabidopsis thaliana At5g16880 831551 VHS domain-containing protein / GAT domain-containing protein F:protein transporter activity;P:intracellular protein transport, intra-Golgi vesicle-mediated transport;C:Golgi stack, plasma membrane;MFPO - - - C.G. S.X.
0.03 7e+0 32 Glycine max PsAffx.psMA002xL20f_at PsAffx.psMA002xL20f - - 3e+0 At5g40960 unknown protein C.G. S.X.
0.14 3e-86 319 Oryza sativa Os06g0297500 BM038601 - Hypothetical protein 1e+0 At5g55120 VTC5 (VITAMIN C DEFECTIVE 5) C.G. S.X.
0.03 7e+0 32 Populus trichocarpa PtpAffx.75420.1.A1_at CV271102 hypothetical protein - 4e+0 At5g03390 unknown protein C.G. S.X.
0.05 1e-6 54 Triticum aestivum Ta.29422.1.S1_at BJ312582 - - 1e+0 At1g66260 RNA and export factor-binding protein, putative C.G. S.X.
0.04 2e+0 32 Vitis vinifera 1607978_at CF205852.1 - - 1e+0 At4g36791 unknown protein C.G. S.X.
0.04 2e+0 32 Zea mays ZmAffx.1437.1.S1_at 11990232-3 - - 2e-53 Atcg00050 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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