Gene omics information

Query gene ID	rbags1e22_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	rbags1e22_s_at	rbags1e22	-	-	3e-1	At3g56360	unknown protein	S.X.	H.G.	Please select
0.71	87.1	Contig13332_at	Contig13332	-	-	2e+0	At1g68280	thioesterase-related	S.X.	H.G.	Please select
0.60	77.3	Contig12594_at	Contig12594	-	-	3e+0	At5g11990	proline-rich family protein	S.X.	H.G.	Please select
0.57	74.9	Contig24555_at	Contig24555	-	-	1e+0	At2g45070	SEC61 BETA	S.X.	H.G.	Please select
0.55	72.0	Contig9632_at	Contig9632	-	-	1e-1	At1g78370	ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)	S.X.	H.G.	Please select
0.50	66.9	Contig13967_at	Contig13967	-	-	8e-6	At1g29800	phosphoinositide binding / zinc ion binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.0	97.2	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.9	97.1	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
4.0	96.0	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.7	95.5	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.7	95.5	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.4	94.8	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	989	rbags1e22_at	rbags1e22	-	-	3e-1	At3g56360	unknown protein	C.G.	S.X.	Please select
0.53	0	831	Contig13966_at	Contig13966	-	-	4e-2	At3g17900	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	36	Contig3124_at	Contig3124	-	-	8e-32	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	C.G.	S.X.	Please select
0.02	1e-1	36	Contig7405_at	Contig7405	-	-	1e-2	At2g18770	signal recognition particle binding	C.G.	S.X.	Please select
0.02	5e-1	34	Contig11242_at	Contig11242	-	-	6e-8	At4g27340	Met-10+ like family protein	C.G.	S.X.	Please select
0.03	2e+0	32	HC113H12_SK_at	HC113H12_SK	-	-	5e+0	At3g01520	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Contig9135_at	Contig9135	-	-	1e-42	At4g11820	MVA1	C.G.	S.X.	Please select
0.01	2e+0	32	Contig2560_at	Contig2560	-	-	4e+0	At3g51880	HMGB1 (HIGH MOBILITY GROUP B 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig2466_at	Contig2466	-	-	5e-22	At5g28060	40S ribosomal protein S24 (RPS24B)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At3g56360	824803	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e+0	32	Glycine max	GmaAffx.81363.1.A1_at	BF325055	-	-	8e-1	At4g33800	unknown protein	C.G.	S.X.	Please select
0.08	2e-40	167	Oryza sativa	Os03g0152800	AK066205.1	-	Protein kinase-like domain containing protein	1e-1	At3g17900	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Populus trichocarpa	PtpAffx.3203.1.A1_s_at	CV255192	hypothetical protein	-	2e-15	At4g24190	SHD (SHEPHERD)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.110646.1.S1_at	CA656678	-	-	1e+1	At5g09370	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1621928_at	CF405830	-	-	2e-2	At1g48420	D-CDES (D-CYSTEINE DESULFHYDRASE)	C.G.	S.X.	Please select
0.14	2e-21	101	Zea mays	Zm.5218.1.A1_at	AY111426.1	-	-	3e+0	At2g30130	ASL5	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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