CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID rbags18e07_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 90.8 rbags18e07_s_at rbags18e07 - - 4e-1 At3g58170 BS14A (BET1P/SFT1P-LIKE PROTEIN 14A) S.X. H.G.
0.83 94.0 EBem09_SQ001_B21_s_at EBem09_SQ001_B21 - - 2e+0 At5g36920 unknown protein S.X. H.G.
0.71 87.1 Contig7221_s_at Contig7221 - - 6e+0 At5g47610 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.67 84.7 Contig18703_at Contig18703 - - 1e+0 At5g48205 zinc ion binding S.X. H.G.
0.59 75.8 Contig19492_at Contig19492 - - 5e-1 At5g41340 UBC4 (UBIQUITIN CONJUGATING ENZYME 4) S.X. H.G.
0.50 66.9 Contig19387_at Contig19387 - - 2e-1 At3g30580 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.3 94.6 GSM130800 control, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
3.0 93.8 GSM146374 Golden Promise shoot Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.0 93.8 GSM146373 Golden Promise shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.9 93.4 GSM130802 salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
2.9 93.4 GSM146379 Maythorpe shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.8 93.1 GSM130804 JA, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
2.8 93.1 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
2.7 92.7 GSM146375 Maythorpe shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.7 92.7 GSM146370 Golden Promise shoot Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.6 92.3 GSM130799 control, biological rep1 GSE5605 Expression data from barley under salinity stress and JA treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 5e-135 478 rbags18e07_at rbags18e07 - - 4e-1 At3g58170 BS14A (BET1P/SFT1P-LIKE PROTEIN 14A) C.G. S.X.
0.22 1e-95 347 Contig1023_at Contig1023 - - 3e-6 At1g48630 RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B) C.G. S.X.
0.02 9e-1 32 Contig4635_at Contig4635 - - 7e-23 At1g01090 PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA) C.G. S.X.
0.02 3e+0 30 Contig17993_at Contig17993 - - 7e-1 At5g66190 FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1) C.G. S.X.
0.02 3e+0 30 Contig17556_at Contig17556 - - 8e+0 At5g53940 yippee family protein C.G. S.X.
0.04 1e+1 28 HVSMEb0007L17r2_s_at HVSMEb0007L17r2 - - 3e-1 At3g50940 AAA-type ATPase family protein C.G. S.X.
0.02 1e+1 28 Contig807_s_at Contig807 - - 6e-53 At1g55490 CPN60B (CHAPERONIN 60 BETA) C.G. S.X.
0.02 1e+1 28 Contig807_at Contig807 - - 6e-53 At1g55490 CPN60B (CHAPERONIN 60 BETA) C.G. S.X.
0.02 1e+1 28 Contig12277_at Contig12277 - - 2e-1 At4g08690 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 4e-1 34 Arabidopsis thaliana At3g58170 824986 BS14A (BET1P/SFT1P-LIKE PROTEIN 14A) Encodes a Bet1/Sft1-like SNARE protein which fully suppresses the temperature-sensitive growth defect in sft1-1 yeast cells; however, it cannot support the deletion of the yeast BET1 gene (bet1Δ). - - - C.G. S.X.
0.05 1e+1 30 Glycine max GmaAffx.92482.1.S1_at CF808207 - - 2e-39 At2g44120 60S ribosomal protein L7 (RPL7C) C.G. S.X.
0.03 9e-1 34 Oryza sativa Os01g0686800 D38231.1 - Guanine nucleotide-binding protein betasubunit-like protein (GPB-LR) (RWD) 1e-23 At1g18080 ATARCA C.G. S.X.
0.05 1e+1 30 Populus trichocarpa PtpAffx.219096.1.S1_at pmrna34915 hypothetical protein - 3e+0 At5g50361 unknown protein C.G. S.X.
0.22 6e-93 339 Triticum aestivum Ta.23073.1.S1_at BJ250184 - - 6e-20 At1g18080 ATARCA C.G. S.X.
0.04 5e-1 32 Vitis vinifera 1616242_at CF213196 hypothetical protein LOC100263350 - 2e-1 At4g18500 unknown protein C.G. S.X.
0.04 1e+1 28 Zea mays ZmAffx.571.1.A1_at AI714687 hypothetical protein LOC100191288 - 3e+0 At5g20230 ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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