Gene omics information

Query gene ID	rbags17a06_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	rbags17a06_s_at	rbags17a06	-	-	1e+0	At5g42300	UBL5 (UBIQUITIN-LIKE PROTEIN 5)	S.X.	H.G.	Please select
0.50	66.9	Contig4240_s_at	Contig4240	-	-	3e-3	At5g28630	glycine-rich protein	S.X.	H.G.	Please select
0.38	49.5	HX08J20r_at	HX08J20r	-	-	2e+0	At4g15920	-	S.X.	H.G.	Please select
0.31	38.6	Contig17534_at	Contig17534	-	-	1e-5	At4g01040	glycosyl hydrolase family 18 protein	S.X.	H.G.	Please select
0.27	32.1	Contig18246_at	Contig18246	-	-	2e+0	At4g27410	RD26 (RESPONSIVE TO DESICCATION 26)	S.X.	H.G.	Please select
0.24	27.2	Contig5857_at	Contig5857	-	-	2e-1	At1g02965	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.3	99.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.6	99.0	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.1	98.7	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.0	98.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.7	98.6	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.6	98.6	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.2	98.5	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.0	98.4	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.68	0	960	Contig4238_at	Contig4238	-	-	3e+0	At1g60730	aldo/keto reductase family protein	C.G.	S.X.	Please select
0.09	2e-7	56	Contig5678_at	Contig5678	-	-	4e-8	At1g60710	ATB2	C.G.	S.X.	Please select
0.07	1e-2	40	Contig3852_at	Contig3852	-	-	6e-23	At1g60730	aldo/keto reductase family protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig8403_at	Contig8403	-	-	3e-1	At2g45120	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.03	6e-1	34	EBem10_SQ001_J14_s_at	EBem10_SQ001_J14	-	-	9e+0	At5g28450	chlorophyll A-B binding protein, chloroplast, putative / LHCI type II CAB, putative	C.G.	S.X.	Please select
0.01	6e-1	34	Contig10753_at	Contig10753	-	-	9e-7	At4g36520	heat shock protein binding	C.G.	S.X.	Please select
0.02	3e+0	32	Contig10935_at	Contig10935	-	-	1e-2	At5g41130	acyltransferase/ catalytic	C.G.	S.X.	Please select
0.02	3e+0	32	Contig16057_at	Contig16057	-	-	2e+0	At5g01530	chlorophyll A-B binding protein CP29 (LHCB4)	C.G.	S.X.	Please select
0.03	3e+0	32	HVSMEn0024J24r2_at	HVSMEn0024J24r2	-	-	8e-1	At5g28590	DNA-binding protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	1e+0	34	Arabidopsis thaliana	At5g42300	834235	UBL5 (UBIQUITIN-LIKE PROTEIN 5)	F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	5e-1	36	Glycine max	Gma.9995.1.S1_at	CF922008	-	-	1e-2	At1g60710	ATB2	C.G.	S.X.	Please select
0.35	2e-72	274	Oryza sativa	Os01g0618100	AU029622	-	IN2-2 protein	5e-1	At5g47800	phototropic-responsive NPH3 family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-2	40	Populus trichocarpa	PtpAffx.84833.1.S1_at	CV241171	hypothetical protein	-	2e-1	At1g60710	ATB2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.42	3e-162	571	Triticum aestivum	Ta.22895.1.S1_at	BJ319923	-	-	8e-1	At1g60730	aldo/keto reductase family protein	C.G.	S.X.	Please select
0.11	3e-8	57	Vitis vinifera	1620601_at	CB970415	hypothetical protein LOC100243526	-	3e-2	At1g60710	ATB2	C.G.	S.X.	Please select
0.36	9e-71	266	Zea mays	Zm.5214.1.S1_at	AY105958.1	auxin-induced protein PCNT115	-	5e-2	At1g60680	aldo/keto reductase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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