Gene omics information

Query gene ID	rbags16o16_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.89	95.4	rbags16o16_s_at	rbags16o16	-	-	8e+0	At5g50270	F-box family protein	S.X.	H.G.	Please select
0.47	62.2	Contig21245_at	Contig21245	-	-	2e+0	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	S.X.	H.G.	Please select
0.38	49.5	Contig16950_at	Contig16950	-	-	5e+0	At5g09540	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.36	47.1	rbags1i23_s_at	rbags1i23	-	-	2e-16	At1g67430	60S ribosomal protein L17 (RPL17B)	S.X.	H.G.	Please select
0.36	47.1	Contig3178_s_at	Contig3178	-	-	5e-35	At2g27020	PAG1	S.X.	H.G.	Please select
0.35	45.1	Contig15562_at	Contig15562	-	-	6e-6	At3g12270	PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3)	S.X.	H.G.	Please select
0.34	43.6	HA27E10r_x_at	HA27E10r	-	-	3e-5	At2g39390	60S ribosomal protein L35 (RPL35B)	S.X.	H.G.	Please select
0.34	43.6	Contig18503_at	Contig18503	-	-	1e-1	At4g01995	unknown protein	S.X.	H.G.	Please select
0.33	42.6	EBpi01_SQ001_K06_s_at	EBpi01_SQ001_K06	-	-	3e-12	At4g15000	60S ribosomal protein L27 (RPL27C)	S.X.	H.G.	Please select
0.32	40.3	HU09E20u_s_at	HU09E20u	-	-	3e+0	At3g55820	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.0	98.7	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.6	98.2	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.1	98.0	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.0	97.9	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.5	97.6	GSM146378	Maythorpe shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.4	97.5	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.4	97.5	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.3	97.4	GSM130799	control, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
5.3	97.4	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	6e-147	517	rbags16o16_at	rbags16o16	-	-	8e+0	At5g50270	F-box family protein	C.G.	S.X.	Please select
0.28	4e-80	295	Contig10079_at	Contig10079	-	-	3e-18	At3g53580	diaminopimelate epimerase family protein	C.G.	S.X.	Please select
0.05	3e-1	34	Contig20070_at	Contig20070	-	-	2e-4	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	C.G.	S.X.	Please select
0.02	1e+0	32	Contig4944_s_at	Contig4944	-	-	3e+0	At5g14360	ubiquitin family protein	C.G.	S.X.	Please select
0.04	1e+0	32	HVSMEc0012M10r2_at	HVSMEc0012M10r2	-	-	7e-8	At5g11730	unknown protein	C.G.	S.X.	Please select
0.06	4e+0	30	Contig15545_at	Contig15545	-	-	5e-1	At1g13740	AFP2 (ABI FIVE BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.02	4e+0	30	Contig13589_at	Contig13589	-	-	6e-10	At5g26040	HDA2	C.G.	S.X.	Please select
0.04	4e+0	30	Contig21919_at	Contig21919	-	-	1e+0	At2g41980	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.06	4e+0	30	HV08D21r_at	HV08D21r	-	-	6e+0	At3g29305	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e+0	30	Arabidopsis thaliana	At5g50270	835092	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	7e-1	34	Glycine max	Gma.2103.1.S1_at	BM526481	-	-	3e+0	At3g23255	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	32	Oryza sativa	OsAffx.28403.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	7e-1	34	Populus trichocarpa	PtpAffx.97969.1.S1_at	CA925570	hypothetical protein	-	6e-15	At1g21740	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	1e-44	178	Triticum aestivum	Ta.20481.1.A1_at	CA614346	-	-	2e-2	At3g53580	diaminopimelate epimerase family protein	C.G.	S.X.	Please select
0.06	4e-2	36	Vitis vinifera	1611330_at	AY043236.1	cellulase CEL1-like	-	1e-2	At4g02290	AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13)	C.G.	S.X.	Please select
0.04	1e+1	28	Zea mays	ZmAffx.522.1.A1_at	AI711639	-	-	3e+0	At5g40650	SDH2-2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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