Gene omics information

Query gene ID	rbaal9h21_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.5	rbaal9h21_s_at	rbaal9h21	-	-	5e-5	At1g79040	PSBR (photosystem II subunit R)	S.X.	H.G.	Please select
0.92	98.4	Contig11479_at	Contig11479	-	-	9e-3	At4g25770	unknown protein	S.X.	H.G.	Please select
0.60	77.3	Contig9009_s_at	Contig9009	-	-	4e-1	At3g10116	unknown protein	S.X.	H.G.	Please select
0.60	77.3	HVSMEb0001K06r2_at	HVSMEb0001K06r2	-	-	8e-1	At5g58210	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.55	72.0	HVSMEc0004G20r2_at	HVSMEc0004G20r2	-	-	1e+1	At5g28610	-	S.X.	H.G.	Please select
0.50	66.9	Contig18349_at	Contig18349	-	-	1e-1	At4g14770	TCX2 (TESMIN/TSO1-LIKE CXC 2)	S.X.	H.G.	Please select
0.44	58.9	Contig3986_s_at	Contig3986	-	-	6e-2	At4g13450	universal stress protein (USP) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
42.8	99.9	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
28.7	99.9	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
28.2	99.8	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
27.8	99.8	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
23.0	99.8	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
19.9	99.7	GSM71143	OWB-R stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
18.1	99.7	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
14.1	99.5	GSM71156	Morex stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
13.4	99.4	GSM71155	Morex stress and unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
13.0	99.4	GSM71142	OWB-R stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.69	1e-173	607	Contig11477_at	Contig11477	-	-	8e-5	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please select
0.21	1e-16	85	Contig996_s_at	Contig996	-	-	5e-3	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please select
0.23	1e-16	85	Contig931_at	Contig931	-	-	5e-3	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please select
0.10	1e-16	85	Contig383_at	Contig383	-	-	2e-2	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please select
0.26	2e-6	52	S0001000056D22F1_at	S0001000056D22F1	-	-	3e+0	At4g34170	kelch repeat-containing F-box family protein	C.G.	S.X.	Please select
0.02	4e-1	34	Contig11446_at	Contig11446	-	-	6e-4	At1g62240	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	34	Contig4088_s_at	Contig4088	-	-	2e-34	At4g21980	APG8A (AUTOPHAGY 8A)	C.G.	S.X.	Please select
0.03	4e-1	34	Contig4088_at	Contig4088	-	-	2e-34	At4g21980	APG8A (AUTOPHAGY 8A)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig8786_at	Contig8786	-	-	1e-17	At1g50140	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	5e-5	48	Arabidopsis thaliana	At1g79040	844245	PSBR (photosystem II subunit R)	Encodes for the 10 kDa PsbR subunit of photosystem II (PSII). This subunit appears to be involved in the stable assembly of PSII, particularly that of the oxygen-evolving complex subunit PsbP. Mutants defective in this gene have reduced amounts of subunits PsbP and PsbQ in PSII. In turn, assembly of PsbR is dependent on the presence of PsbJ.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	Gma.7703.1.S1_at	BQ298981	-	-	3e+0	At5g06790	unknown protein	C.G.	S.X.	Please select
0.48	2e-37	157	Oryza sativa	Os.20936.1.S1_a_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	5e-3	42	Populus trichocarpa	PtpAffx.249.691.S1_at	CV262892	hypothetical protein	-	4e-12	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.31	4e-18	91	Triticum aestivum	Ta.28750.2.A1_x_at	BG905748	-	-	1e+0	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please select
0.09	6e-5	46	Vitis vinifera	1618031_s_at	CF404451	hypothetical protein LOC100243967	-	2e-12	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please select
0.03	2e+1	28	Zea mays	ZmAffx.602.1.A1_at	AI715030	-	-	8e-1	At1g30670	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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