Gene omics information

Query gene ID	rbaal38l09_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.86	94.8	rbaal38l09_s_at	rbaal38l09	-	-	1e+0	At5g50423	-	S.X.	H.G.	Please select
0.86	94.8	Contig3876_at	Contig3876	-	-	7e-2	At4g21105	cytochrome-c oxidase/ electron carrier	S.X.	H.G.	Please select
0.67	84.7	HV05A09u_s_at	HV05A09u	-	-	3e+0	At4g09250	-	S.X.	H.G.	Please select
0.60	77.3	Contig3877_s_at	Contig3877	-	-	1e-4	At3g46000	ADF2 (ACTIN DEPOLYMERIZING FACTOR 2)	S.X.	H.G.	Please select
0.36	47.1	Contig4209_at	Contig4209	-	-	1e+0	At5g26200	mitochondrial substrate carrier family protein	S.X.	H.G.	Please select
0.36	47.1	Contig4208_at	Contig4208	-	-	6e-6	At2g36580	pyruvate kinase, putative	S.X.	H.G.	Please select
0.33	42.6	Contig10438_at	Contig10438	-	-	2e-14	At4g33260	CDC20.2	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.8	99.5	GSM398270	HS41-1_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
14.7	99.5	GSM363460	Control (C) - rep1	GSE14521	Late response to boron toxicity in barley leaves
10.7	99.2	GSM363464	5 mM B(OH)3 treatment (5B) - rep2	GSE14521	Late response to boron toxicity in barley leaves
10.2	99.1	GSM398260	Martin_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.9	99.1	GSM398283	Moroc9-75_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.6	99.0	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.6	99.0	GSM398259	Martin_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.8	98.9	GSM363463	5 mM B(OH)3 treatment (5B) - rep1	GSE14521	Late response to boron toxicity in barley leaves
8.7	98.9	GSM398274	Moroc9-75_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.6	98.8	GSM363462	Control (C) - rep3	GSE14521	Late response to boron toxicity in barley leaves

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	2e-81	299	Contig3875_s_at	Contig3875	-	-	9e-5	At1g01060	LHY (LATE ELONGATED HYPOCOTYL)	C.G.	S.X.	Please select
0.10	2e-81	299	Contig3873_at	Contig3873	-	-	3e-20	At1g01060	LHY (LATE ELONGATED HYPOCOTYL)	C.G.	S.X.	Please select
0.51	3e-74	276	HV_CEa0006F14r2_x_at	HV_CEa0006F14r2	-	-	3e+0	At5g17480	APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.03	6e-1	32	Contig13673_at	Contig13673	-	-	5e-4	At2g29200	APUM1 (Arabidopsis Pumilio 1)	C.G.	S.X.	Please select
0.02	3e+0	30	Contig7864_at	Contig7864	-	-	2e+0	At2g24762	AtGDU4 (Arabidopsis thaliana GLUTAMINE DUMPER 4)	C.G.	S.X.	Please select
0.04	3e+0	30	HZ52D05r_s_at	HZ52D05r	-	-	4e+0	At5g40180	unknown protein	C.G.	S.X.	Please select
0.04	3e+0	30	EBro03_SQ005_C24_s_at	EBro03_SQ005_C24	-	-	4e+0	At5g40180	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	30	Contig3780_x_at	Contig3780	-	-	4e-1	At4g39250	ATRL1 (ARABIDOPSIS RAD-LIKE 1)	C.G.	S.X.	Please select
0.03	1e+1	28	Contig24580_at	Contig24580	-	-	7e+0	At4g11510	RALFL28 (ralf-like 28)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	1e+0	32	Arabidopsis thaliana	At5g50423	3771480	-	Encodes a defensin-like (DEFL) family protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	7e+0	30	Glycine max	HgAffx.9115.1.S1_at	CB379386	-	-	1e+0	At1g75190	unknown protein	C.G.	S.X.	Please select
0.04	3e+0	32	Oryza sativa	Os09g0369400	CR286273	-	Trehalose-6-phosphate phosphatase	2e+1	At5g50090	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	8e-3	40	Populus trichocarpa	PtpAffx.202836.1.S1_x_at	pmrna5621	hypothetical protein	-	4e+0	At5g40930	TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.26	2e-45	180	Triticum aestivum	Ta.7524.1.A1_at	BJ250276	-	-	6e-7	At1g01060	LHY (LATE ELONGATED HYPOCOTYL)	C.G.	S.X.	Please select
0.05	4e-1	32	Vitis vinifera	1622685_at	CD012282	hypothetical protein LOC100264650	-	1e-12	At5g56760	ATSERAT1	C.G.	S.X.	Please select
0.06	9e+0	28	Zea mays	ZmAffx.930.1.A1_at	AI795480	-	-	9e+0	Atmg01210	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage