Gene omics information

Query gene ID	rbaal29b24_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.87	95.0	rbaal29b24_at	rbaal29b24	-	-	1e-6	At5g15790	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.49	63.7	Contig18972_at	Contig18972	-	-	4e+0	At3g05165	sugar transporter, putative	S.X.	H.G.	Please select
0.42	55.2	Contig18916_at	Contig18916	-	-	9e-1	At5g09995	unknown protein	S.X.	H.G.	Please select
0.42	55.2	Contig25363_at	Contig25363	cytokinin dehydrogenase 2	-	3e-5	At3g63440	CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6)	S.X.	H.G.	Please select
0.41	53.9	Contig10187_at	Contig10187	-	-	1e-2	At1g72080	unknown protein	S.X.	H.G.	Please select
0.39	50.5	Contig9902_at	Contig9902	-	-	2e+0	At5g35170	adenylate kinase family protein	S.X.	H.G.	Please select
0.38	49.5	Contig16046_at	Contig16046	-	-	1e+0	At5g10860	CBS domain-containing protein	S.X.	H.G.	Please select
0.38	49.5	Contig5709_at	Contig5709	-	-	3e-56	At2g30200	[acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase	S.X.	H.G.	Please select
0.36	47.1	HF12C18r_at	HF12C18r	-	-	1e+0	At5g22410	peroxidase, putative	S.X.	H.G.	Please select
0.33	42.6	Contig10389_at	Contig10389	-	-	2e+0	At5g67490	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.0	98.7	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.4	98.1	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.1	98.0	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.7	97.7	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.6	97.7	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.4	97.5	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.0	97.2	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.0	97.2	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.7	96.9	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	7e-4	44	Contig12256_at	Contig12256	-	-	2e-10	At5g15790	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig11167_at	Contig11167	-	-	1e-17	At3g45780	PHOT1 (PHOTOTROPIN 1)	C.G.	S.X.	Please select
0.03	6e-1	34	HT08I16u_at	HT08I16u	-	-	1e+0	At4g01897	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig7890_at	Contig7890	-	-	4e-5	At3g55000	TON1A (TONNEAU 1)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig15683_at	Contig15683	-	-	4e-1	At3g05220	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig12294_at	Contig12294	-	-	3e-14	At5g27820	ribosomal protein L18 family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig11153_at	Contig11153	-	-	6e-1	At5g24890	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig24192_at	Contig24192	-	-	1e+0	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	C.G.	S.X.	Please select
0.04	3e+0	32	Contig21393_at	Contig21393	-	-	7e+0	At5g26617	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	1e-6	54	Arabidopsis thaliana	At5g15790	831435	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:chloroplast;MPOFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	3e-5	50	Glycine max	GmaAffx.93609.1.S1_at	CF809334	-	-	1e-37	At3g02290	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.28	1e-91	337	Oryza sativa	Os11g0629300	AK120485.1	-	RING-H2 finger protein RHB1a	5e-14	At3g02290	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	1e-7	57	Populus trichocarpa	PtpAffx.22410.1.S1_at	CV272742	hypothetical protein	-	5e-29	At3g02290	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.50	7e-129	460	Triticum aestivum	TaAffx.76633.1.S1_at	CK162934	-	-	8e-10	At3g02290	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.17	3e-17	87	Vitis vinifera	1618199_at	CD802229	hypothetical protein LOC100247128	-	7e-8	At5g15790	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.19	2e-43	174	Zea mays	Zm.9702.1.S1_at	BM336195	hypothetical protein LOC100273572	-	4e-7	At5g15790	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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