Gene omics information

Query gene ID	rbaal22m07_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.5	rbaal22m07_at	rbaal22m07	-	-	2e-1	At1g06440	ubiquitin thiolesterase	S.X.	H.G.	Please select
0.60	77.3	Contig13042_at	Contig13042	-	-	3e-1	At1g60350	anac024 (Arabidopsis NAC domain containing protein 24)	S.X.	H.G.	Please select
0.50	66.9	Contig16432_at	Contig16432	-	-	1e-2	At3g12250	TGA6 (TGACG MOTIF-BINDING FACTOR 6)	S.X.	H.G.	Please select
0.40	53.1	Contig2475_at	Contig2475	-	-	7e-2	At4g11870	unknown protein	S.X.	H.G.	Please select
0.38	49.5	Contig9752_at	Contig9752	-	-	3e+0	At2g11651	unknown protein	S.X.	H.G.	Please select
0.36	47.1	Contig11259_at	Contig11259	-	-	8e-4	At5g17230	phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase	S.X.	H.G.	Please select
0.35	45.1	Contig624_at	Contig624	-	-	3e-3	At2g31390	pfkB-type carbohydrate kinase family protein	S.X.	H.G.	Please select
0.28	35.5	Contig725_s_at	Contig725	-	-	1e-15	At1g21750	ATPDIL1-1 (PDI-LIKE 1-1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.3	97.4	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.3	96.4	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.2	96.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.7	95.5	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.5	95.1	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.2	94.3	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.1	94.1	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.1	94.1	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	7e-9	59	Contig18910_at	Contig18910	-	-	4e+0	At3g18850	LPAT5	C.G.	S.X.	Please select
0.02	4e-1	34	Contig14680_at	Contig14680	-	-	2e+0	At1g19550	dehydroascorbate reductase, putative	C.G.	S.X.	Please select
0.04	4e-1	34	HU10G08u_x_at	HU10G08u	-	-	3e+0	At1g48130	ATPER1	C.G.	S.X.	Please select
0.04	4e-1	34	HU10G08u_at	HU10G08u	-	-	3e+0	At1g48130	ATPER1	C.G.	S.X.	Please select
0.02	4e-1	34	Contig9823_at	Contig9823	-	-	5e-1	At5g28781	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	34	HVSMEb0002E18r2_at	HVSMEb0002E18r2	-	-	3e-1	At4g17220	ATMAP70-5 (microtubule-associated proteins 70-5)	C.G.	S.X.	Please select
0.01	2e+0	32	Contig6254_at	Contig6254	-	-	3e+0	At2g37950	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig26435_at	Contig26435	-	-	3e-5	At2g26040	Bet v I allergen family protein	C.G.	S.X.	Please select
0.03	7e+0	30	rbags15c07_at	rbags15c07	-	-	3e-7	At2g20190	CLASP (CLIP-ASSOCIATED PROTEIN)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	Arabidopsis thaliana	At1g06440	837156	ubiquitin thiolesterase	F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:mitochondrion, intracellular;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	2e-2	40	Glycine max	GmaAffx.57320.1.A1_at	BI971270	-	-	2e-18	At1g32490	ESP3 (ENHANCED SILENCING PHENOTYPE 3)	C.G.	S.X.	Please select
0.18	1e-26	121	Oryza sativa	Os08g0335000	CF330163	-	Pre-mRNA splicing factor RNA helicase PRP43(Helicase JA1)	8e-21	At1g32490	ESP3 (ENHANCED SILENCING PHENOTYPE 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Populus trichocarpa	PtpAffx.222009.1.S1_at	pmrna39198	hypothetical protein	-	4e+0	At1g26945	KDR (KIDARI)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.32	2e-75	282	Triticum aestivum	Ta.25604.1.S1_at	CD454134	-	-	8e-16	At1g32490	ESP3 (ENHANCED SILENCING PHENOTYPE 3)	C.G.	S.X.	Please select
0.12	7e-8	56	Vitis vinifera	1608752_at	CF212288	similar to EMB2733/ESP3 (EMBRYO DEFECTIVE 2733); ATP-dependent RNA helicase	-	5e-12	At1g32490	ESP3 (ENHANCED SILENCING PHENOTYPE 3)	C.G.	S.X.	Please select
0.04	2e-2	38	Zea mays	Zm.15324.1.A1_at	CB350660	-	-	4e-3	At4g24230	ACBP3 (ACYL-COA-BINDING DOMAIN 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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