Gene omics information

Query gene ID	rbaak4i15_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	75.8	rbaak4i15_s_at	rbaak4i15	-	-	2e-6	At5g08680	ATP synthase beta chain, mitochondrial, putative	S.X.	H.G.	Please select
0.73	88.7	Contig16423_at	Contig16423	-	-	2e+0	At3g02580	STE1 (STEROL 1)	S.X.	H.G.	Please select
0.71	87.1	Contig3332_at	Contig3332	-	-	2e-1	At3g21215	RNA-binding protein, putative	S.X.	H.G.	Please select
0.67	84.7	Contig6860_at	Contig6860	-	-	8e-4	At5g66815	unknown protein	S.X.	H.G.	Please select
0.55	72.0	HA06i14r_s_at	HA06i14r	-	-	8e-4	At5g15650	RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)	S.X.	H.G.	Please select
0.48	63.2	Contig416_x_at	Contig416	-	-	5e-29	At4g24190	SHD (SHEPHERD)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.4	96.6	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.2	96.3	GSM282024	Malting_day4_Merit_rep2	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.0	96.0	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9	95.8	GSM146378	Maythorpe shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9	95.8	GSM146372	Golden Promise shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.8	95.7	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.7	95.5	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.7	95.5	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.7	95.5	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.65	7e-70	262	rbags21g14_at	rbags21g14	-	-	1e-15	At5g08680	ATP synthase beta chain, mitochondrial, putative	C.G.	S.X.	Please select
0.16	1e-12	71	Contig1958_at	Contig1958	-	-	9e-27	At5g08670	ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism	C.G.	S.X.	Please select
0.07	1e-12	71	Contig1956_s_at	Contig1956	-	-	1e-154	At5g08680	ATP synthase beta chain, mitochondrial, putative	C.G.	S.X.	Please select
0.04	3e-1	34	Contig13136_at	Contig13136	-	-	5e+0	At4g09100	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	1e+0	32	Contig14823_at	Contig14823	-	-	8e-1	At1g21350	antioxidant/ oxidoreductase	C.G.	S.X.	Please select
0.02	1e+0	32	Contig14823_s_at	Contig14823	-	-	8e-1	At1g21350	antioxidant/ oxidoreductase	C.G.	S.X.	Please select
0.04	5e+0	30	HV08O16u_at	HV08O16u	-	-	1e+0	At4g14630	GLP9 (GERMIN-LIKE PROTEIN 9)	C.G.	S.X.	Please select
0.01	5e+0	30	Contig12296_at	Contig12296	-	-	2e-2	At4g29130	HXK1 (HEXOKINASE 1)	C.G.	S.X.	Please select
0.03	5e+0	30	Contig1131_s_at	Contig1131	-	-	1e-10	At1g07790	HTB1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e-6	52	Arabidopsis thaliana	At5g08680	830769	ATP synthase beta chain, mitochondrial, putative	Encodes the mitochondrial ATP synthase beta-subunit. This subunit is encoded by a multigene family of three members (At5g08670, At5g08680, At5g08690) that shared 98% sequence identity at the amino acid level.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	6e-11	67	Glycine max	GmaAffx.90801.1.S1_at	CF805999	-	-	3e-119	At5g08680	ATP synthase beta chain, mitochondrial, putative	C.G.	S.X.	Please select
0.12	2e-14	79	Oryza sativa	Os01g0685800	NM_192090.1	-	ATP synthase beta chain, mitochondrial precursor(EC 3.6.3.14)	6e-156	At5g08680	ATP synthase beta chain, mitochondrial, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-11	69	Populus trichocarpa	PtpAffx.249.105.A1_at	CV283073	hypothetical protein	-	0	At5g08680	ATP synthase beta chain, mitochondrial, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.35	5e-17	87	Triticum aestivum	Ta.17898.1.S1_at	CA625403	-	-	8e-20	At5g08670	ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism	C.G.	S.X.	Please select
0.11	5e-5	46	Vitis vinifera	1610327_at	CB972987	hypothetical protein LOC100259544	-	3e-160	At5g08690	ATP synthase beta chain 2, mitochondrial	C.G.	S.X.	Please select
0.09	3e-10	63	Zea mays	Zm.957.1.S1_a_at	M36087.1	mitochondrial F-1-ATPase subunit 2	-	2e-165	At5g08670	ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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