Gene omics information

Query gene ID	bags30h06_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	bags30h06_at	bags30h06	-	-	3e-10	At2g24280	serine carboxypeptidase S28 family protein	S.X.	H.G.	Please select
0.25	28.9	HVSMEi0001E15r2_s_at	HVSMEi0001E15r2	-	-	3e+0	At3g08710	ATH9 (thioredoxin H-type 9)	S.X.	H.G.	Please select
0.14	12.9	Contig3556_at	Contig3556	-	-	3e+0	At1g60640	unknown protein	S.X.	H.G.	Please select
0.05	4.1	Contig11418_at	Contig11418	-	-	8e-3	At1g51270	structural molecule/ transmembrane receptor	S.X.	H.G.	Please select
0.03	2.6	Contig7076_s_at	Contig7076	-	-	3e-4	At1g01790	KEA1 (K EFFLUX ANTIPORTER 1)	S.X.	H.G.	Please select
0.02	1.8	Contig14948_at	Contig14948	-	-	1e-4	At5g35730	EXS family protein / ERD1/XPR1/SYG1 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.6	99.6	GSM419978	Awn_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
15.6	99.6	GSM440969	Control awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
13.4	99.4	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
12.5	99.4	GSM419980	Awn_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
12.5	99.4	GSM440971	Control awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
12.1	99.3	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
10.5	99.2	GSM398270	HS41-1_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
10.1	99.1	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
8.9	98.9	GSM398267	HS41-1_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.8	98.6	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	2e-167	587	Contig9492_at	Contig9492	-	-	6e-5	At2g24280	serine carboxypeptidase S28 family protein	C.G.	S.X.	Please select
0.01	6e-1	34	Contig11648_at	Contig11648	-	-	5e-13	At5g04360	ATLDA (LIMIT DEXTRINASE)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig8177_at	Contig8177	-	-	7e-3	At2g18400	ribosomal protein L6 family protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig7000_at	Contig7000	-	-	9e-30	At3g58170	BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)	C.G.	S.X.	Please select
0.01	6e-1	34	Contig6755_s_at	Contig6755	-	-	4e-4	At3g14205	phosphoinositide phosphatase family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Contig18897_at	Contig18897	-	-	1e-8	At5g46390	peptidase S41 family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Contig21767_at	Contig21767	-	-	1e+0	At5g05090	myb family transcription factor	C.G.	S.X.	Please select
0.03	2e+0	32	Contig15067_at	Contig15067	-	-	1e+0	At5g65250	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig12834_at	Contig12834	-	-	6e-13	At5g47780	GAUT4 (Galacturonosyltransferase 4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-10	65	Arabidopsis thaliana	At2g24280	816963	serine carboxypeptidase S28 family protein	F:serine-type peptidase activity, serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system, lysosome;MOFPB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-1	36	Glycine max	GmaAffx.79165.1.S1_at	CA783280	-	-	9e-1	At3g11210	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.19	1e-79	297	Oryza sativa	Os06g0647400	AK068457.1	-	Lysosomal Pro-X carboxypeptidase	1e-15	At2g24280	serine carboxypeptidase S28 family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	2e-15	83	Populus trichocarpa	PtpAffx.10532.1.S1_a_at	CV237901	-	-	6e-45	At2g24280	serine carboxypeptidase S28 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.73	2e-166	585	Triticum aestivum	Ta.24591.1.A1_at	BJ253512	-	-	3e-10	At2g24280	serine carboxypeptidase S28 family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1622293_at	BQ794341	hypothetical protein LOC100262658	-	4e+0	At5g58210	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.03	8e+0	30	Zea mays	Zm.7977.1.A1_at	AI745853	hypothetical protein LOC100193283	-	1e-1	At1g14340	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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