Gene omics information

Query gene ID	ZmAffx.999.1.S1_at
Gene name	hypothetical protein LOC100279401
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	ZmAffx.999.1.S1_at	AI881222	hypothetical protein LOC100279401	-	5e-2	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.566.1.A1_at	AI714636	-	-	2e-1	At5g05610	AL1 (ALFIN-LIKE 1)	S.X.	H.G.	Please select
0.46	58.4	Zm.14107.2.A1_at	AI770963	-	-	8e-1	At3g56880	VQ motif-containing protein	S.X.	H.G.	Please select
0.38	44.2	Zm.12535.1.S1_at	AY105384.1	hypothetical protein LOC100278440	-	9e+0	At5g01390	DNAJ heat shock protein, putative	S.X.	H.G.	Please select
0.36	41.3	ZmAffx.734.1.A1_at	AI740044	-	-	1e+1	At5g01670	aldose reductase, putative	S.X.	H.G.	Please select
0.36	41.3	Zm.4359.2.A1_x_at	AI795776	EMB2756	-	2e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.33	36.0	ZmAffx.224.1.A1_at	AI670233	-	-	8e-1	At5g06770	KH domain-containing protein / zinc finger (CCCH type) family protein	S.X.	H.G.	Please select
0.33	36.0	Zm.14784.1.A1_at	BG841481	-	-	3e+0	At3g01175	-	S.X.	H.G.	Please select
0.32	33.4	Zm.13162.1.A1_at	CO521967	-	-	9e-3	At3g02040	SRG3 (senescence-related gene 3)	S.X.	H.G.	Please select
0.30	29.8	Zm.9891.1.A1_at	BM350582	-	-	1e+0	At5g27290	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
37.4	99.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
35.6	99.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.9	99.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.3	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.2	99.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.2	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.8	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	2e-123	440	ZmAffx.999.1.A1_at	AI881222	-	-	2e-4	At1g54215	proline-rich family protein	C.G.	S.X.	Please select
0.02	9e-2	36	Zm.3866.1.S1_at	CK370021	D-amino acid oxidase	-	3e+0	At1g51760	IAR3 (IAA-ALANINE RESISTANT 3)	C.G.	S.X.	Please select
0.04	9e-2	36	Zm.11599.1.A1_at	BM379225	-	-	5e+0	At5g59990	-	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.94.1.A1_at	X79934.1	Dof2	-	1e-7	At2g28810	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.94.1.S1_at	X79934.1	Dof2	-	1e-7	At2g28810	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.7856.1.A1_at	CA400312	-	-	6e-1	At3g09700	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.6405.1.A1_at	CF630763	LOL1	-	3e-2	At1g32540	LOL1 (LSD ONE LIKE 1)	C.G.	S.X.	Please select
0.04	3e-1	34	Zm.6405.2.S1_at	AI881398	-	-	2e-1	At1g32540	LOL1 (LSD ONE LIKE 1)	C.G.	S.X.	Please select
0.04	3e-1	34	Zm.6405.2.A1_a_at	AI881398	LOL1	-	2e-1	At1g32540	LOL1 (LSD ONE LIKE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	5e-2	38	Arabidopsis thaliana	At4g00810	828004	60S acidic ribosomal protein P1 (RPP1B)	F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus;MFPOA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	PsAffx.psHB044xK22f_s_at	PsAffx.psHB044xK22f	-	-	1e+0	At5g14380	AGP6 (Arabinogalactan proteins 6)	C.G.	S.X.	Please select
0.04	4e-1	34	Hordeum vulgare	Contig4808_s_at	Contig4808	-	-	2e-1	At1g54410	dehydrin family protein	C.G.	S.X.	Please select
0.07	1e-13	77	Oryza sativa	Os09g0517600	AK101828.1	-	Actin-binding FH2 domain containing protein	2e-5	At5g67470	formin homology 2 domain-containing protein / FH2 domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e+0	34	Populus trichocarpa	PtpAffx.209869.1.S1_s_at	pmrna19444	hypothetical protein	-	2e-1	At5g18030	auxin-responsive protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	3e-3	42	Triticum aestivum	TaAffx.108123.2.S1_at	CA691389	-	-	9e-1	At3g16300	integral membrane family protein	C.G.	S.X.	Please select
0.04	4e-3	40	Vitis vinifera	1614986_at	CF372413	hypothetical protein LOC100261262	-	5e-15	At5g45410	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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