Gene omics information

Query gene ID	ZmAffx.988.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.70	87.0	ZmAffx.988.1.S1_at	AI834703	-	-	3e+0	At5g50562	unknown protein	S.X.	H.G.	Please select
0.52	67.3	Zm.11586.1.A1_at	BM379136	-	-	6e+0	Atmg00280	-	S.X.	H.G.	Please select
0.50	65.7	Zm.3964.1.A1_a_at	AF205603.1	ferric-chelate reductase (NADH)2	-	1e-17	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	S.X.	H.G.	Please select
0.44	55.7	Zm.17625.1.A1_at	CF631845	-	-	4e-23	At1g10200	WLIM1	S.X.	H.G.	Please select
0.40	48.5	ZmAffx.1219.1.S1_s_at	40794996-166	-	-	2e-1	At1g13760	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.17716.1.A1_a_at	CK370089	-	-	4e+0	At4g05010	F-box family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.12454.1.A1_at	CF629114	hypothetical protein LOC100273736	-	6e-3	At1g10640	polygalacturonase	S.X.	H.G.	Please select
0.38	44.2	ZmAffx.533.1.S1_at	AI711769	-	-	8e-1	At5g11790	Ndr family protein	S.X.	H.G.	Please select
0.35	38.9	Zm.9948.1.A1_at	CB350788	3-N-debenzoyl-2-deoxytaxol N-benzoyltransferase	-	2e+0	At1g54575	unknown protein	S.X.	H.G.	Please select
0.28	28.1	Zm.6147.2.S1_at	CD942228	-	-	4e-24	At3g51800	ATG2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
40.1	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
38.5	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
38.4	99.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.6	99.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.2	99.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.8	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	769	ZmAffx.988.1.A1_at	AI834703	hypothetical protein LOC100279528	-	3e+0	At5g50562	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	ZmAffx.477.1.A1_at	AI677582	-	-	8e-1	At5g51860	MADS-box protein (AGL72)	C.G.	S.X.	Please select
0.04	1e+0	32	ZmAffx.477.1.S1_at	AI677582	-	-	8e-1	At5g51860	MADS-box protein (AGL72)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.7462.1.A1_at	BM078496	-	-	3e-1	At1g56010	NAC1	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.5178.1.A1_a_at	AI612308	IAA-amino acid hydrolase ILR1-like 3	-	1e+0	At3g02875	ILR1 (IAA-LEUCINE RESISTANT 1)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.161.1.S1_a_at	M77122.1	protein b-32	-	1e-1	At1g65270	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.161.2.S1_a_at	X70153.1	protein b-32	-	9e-2	At1g65270	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.161.2.S1_x_at	X70153.1	protein b-32	-	9e-2	At1g65270	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.9238.1.A1_at	CO533275	-	-	5e-2	At2g23320	WRKY15	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e+0	32	Arabidopsis thaliana	At5g50562	6240680	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e-1	36	Glycine max	Gma.9694.1.S1_at	CA936058	-	-	6e-6	At4g28980	cyclin-dependent kinase-activating kinase 1At / CDK-activating kinase 1At (CAK1)	C.G.	S.X.	Please select
0.04	1e+0	32	Hordeum vulgare	Contig16915_at	Contig16915	-	-	1e+0	At1g33110	MATE efflux family protein	C.G.	S.X.	Please select
0.06	6e+0	32	Oryza sativa	OsAffx.18937.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.220791.1.S1_at	pmrna37228	hypothetical protein	-	8e-1	At5g08150	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	2e-4	46	Triticum aestivum	TaAffx.57296.1.S1_at	CA632500	-	-	1e+0	At1g43790	TED6 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 6)	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1622312_at	CA814487	hypothetical protein LOC100259939	-	1e+0	At1g62920	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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