CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID ZmAffx.963.1.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 65.7 ZmAffx.963.1.A1_at AI833792 - - 8e-1 At4g04620 ATG8B (autophagy 8b) S.X. H.G.
0.47 59.9 ZmAffx.199.1.S1_at AI668491 - - 7e-1 At1g14687 AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32) S.X. H.G.
0.30 29.8 Zm.19201.2.S1_a_at CO526388 hypothetical protein LOC100216991 - 2e+0 At5g39650 unknown protein S.X. H.G.
0.29 28.1 Zm.8586.1.A1_at BM338441 - - 1e+0 At3g13227 serine-rich protein-related S.X. H.G.
0.23 18.6 ZmAffx.46.1.S1_at AI664945 - - 3e+0 At5g62260 DNA binding S.X. H.G.
0.21 15.5 Zm.13196.1.S1_at AY105985.1 t-snare - 6e-2 At5g59210 myosin heavy chain-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.2 97.8 GSM375794 Deep-sowing 10d treatment UCZ, biological rep1 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
6.4 97.5 GSM375791 Deep-sowing 10d treatment GA3, biological rep1 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
6.4 97.5 GSM375797 Deep-sowing 10d treatment UCZ, biological rep2 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
5.6 97.1 GSM320441 protocol: mRNA - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6 97.1 GSM385707 Deep-sowing 10d treatment IAA, biological rep1 GSE15371 Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
5.6 97.1 GSM320443 protocol: mRNA - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5 97.1 GSM320442 protocol: mRNA - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3 96.9 GSM320445 protocol: mRNA - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1 96.8 GSM385708 Deep-sowing 10d treatment IAA, biological rep2 GSE15371 Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
5.0 96.7 GSM253270 ZM_4.5d_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 807 ZmAffx.963.1.S1_at AI833792 - - 8e-1 At4g04620 ATG8B (autophagy 8b) C.G. S.X.
1.00 0 807 ZmAffx.963.1.A1_s_at AI833792 hypothetical protein LOC100272453 - 8e-1 At4g04620 ATG8B (autophagy 8b) C.G. S.X.
0.85 1e-167 587 Zm.12022.1.A1_at BM382727 - - 8e-1 At4g04620 ATG8B (autophagy 8b) C.G. S.X.
0.05 3e-1 34 ZmAffx.434.1.A1_at AI676950 gpm2 protein - 2e-1 At3g01790 ribosomal protein L13 family protein C.G. S.X.
0.05 3e-1 34 ZmAffx.434.1.S1_at AI676950 - - 2e-1 At3g01790 ribosomal protein L13 family protein C.G. S.X.
0.02 5e+0 30 Zm.7541.1.A1_at BM341407 hypothetical protein LOC100192095 - 6e+0 At3g43110 unknown protein C.G. S.X.
0.01 5e+0 30 Zm.6083.1.A1_at CF629354 Hypothetical protein LOC100216609 - 1e-61 At5g08300 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative C.G. S.X.
0.01 5e+0 30 Zm.602.1.A1_a_at AF326486.1 NOD26-like membrane intrinsic protein3 - 4e-3 At4g10380 NIP5 C.G. S.X.
0.01 5e+0 30 Zm.4989.1.A1_at AI932047 hypothetical protein LOC100191629 - 1e-43 At3g59990 MAP2B (METHIONINE AMINOPEPTIDASE 2B) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 8e-1 34 Arabidopsis thaliana At4g04620 825794 ATG8B (autophagy 8b) F:microtubule binding;P:autophagy;C:unknown;MOPFV - - - C.G. S.X.
0.03 1e+0 34 Glycine max HgAffx.8084.1.A1_at CB824127 - - 4e-1 At4g27310 zinc finger (B-box type) family protein C.G. S.X.
0.03 6e+0 30 Hordeum vulgare Contig3787_at Contig3787 - - 6e+0 At3g32160 unknown protein C.G. S.X.
0.22 1e-31 137 Oryza sativa Os02g0326000 AK102973.1 - Conserved hypothetical protein 2e-4 At3g54290 - C.G. S.X.
0.06 1e+0 34 Populus trichocarpa PtpAffx.215484.1.S1_at pmrna29703 hypothetical protein - 2e-2 At3g44100 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein C.G. S.X.
0.26 2e-13 75 Triticum aestivum TaAffx.39447.1.A1_at BG905225 - - 5e-2 At4g22640 - C.G. S.X.
0.03 4e+0 30 Vitis vinifera 1622224_at CB917502 hypothetical protein LOC100241985 - 5e-15 At1g27350 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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