Gene omics information

Query gene ID	ZmAffx.962.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	65.7	ZmAffx.962.1.S1_at	AI833777	-	-	3e-22	At1g64680	unknown protein	S.X.	H.G.	Please select
0.77	92.1	Zm.16173.1.A1_s_at	AY108851.1	hypothetical protein LOC100192560	-	9e-2	At2g45250	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.3272.1.A1_at	CF633404	deleted in split hand/splt foot protein 1	-	7e-3	At1g64750	ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))	S.X.	H.G.	Please select
0.61	79.5	Zm.2003.1.S1_at	AI629847	hypothetical protein LOC100276048	-	3e+0	At4g09840	unknown protein	S.X.	H.G.	Please select
0.46	58.4	Zm.13147.1.A1_at	CA404957	hypothetical protein LOC100273613	-	1e+0	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	S.X.	H.G.	Please select
0.43	52.8	Zm.4803.1.S1_at	AY111883.1	actin-7	-	1e-142	At2g37620	ACT1 (ACTIN 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
31.5	99.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.8	99.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.9	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.8	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.1	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.2	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	765	ZmAffx.962.1.A1_at	AI833777	hypothetical protein LOC100275523	-	3e-22	At1g64680	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.5563.1.A1_at	BM337680	hypothetical protein LOC100272774	-	1e-2	At4g35730	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	Zm.9059.1.A1_at	BM341108	-	-	1e+0	At1g02840	SR1	C.G.	S.X.	Please select
0.04	1e+0	32	Zm.9058.1.A1_at	BM266530	-	-	5e+0	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.4427.1.A1_at	AI714799	receptor protein kinase PERK1	-	4e-8	At3g24540	protein kinase family protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.429.1.A1_at	AF099110.1	sigma factor SIG2A	-	1e+0	At1g08540	SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.10436.1.S1_at	CF008798	-	-	2e-13	At2g07560	AHA6 (Arabidopsis H(+)-ATPase 6)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.10311.1.A1_at	BM736786	ATP binding protein	-	7e-20	At2g31010	protein kinase family protein	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.8865.1.A1_at	BM267927	hypothetical protein LOC100191271	-	3e-9	At5g35460	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	3e-22	105	Arabidopsis thaliana	At1g64680	842776	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	PsAffx.CL2466Contig1_at	PsAffx.CL2466Contig1	-	-	1e+0	At1g12440	zinc finger (AN1-like) family protein	C.G.	S.X.	Please select
0.33	4e-38	157	Hordeum vulgare	Contig23045_at	Contig23045	-	-	3e-13	At1g64680	unknown protein	C.G.	S.X.	Please select
0.13	5e-28	125	Oryza sativa	Os08g0114100	AK099560.1	-	Conserved hypothetical protein	4e-27	At1g64680	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	3e-4	46	Populus trichocarpa	Ptp.1041.1.S1_at	CK090202	hypothetical protein	-	3e-45	At1g64680	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	TaAffx.130150.2.A1_at	BJ268458	-	-	4e+0	At1g02590	aldehyde oxidase, putative	C.G.	S.X.	Please select
0.10	2e-1	34	Vitis vinifera	1612680_at	BM437446	-	-	3e-27	At1g64680	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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