Gene omics information

Query gene ID	ZmAffx.96.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.96.1.S1_at	AI665410	-	-	1e+1	At4g39130	dehydrin family protein	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.960.1.A1_at	AI833639	hypothetical protein LOC100273178	-	3e+0	At2g19640	ASHR2 (ASH1-RELATED PROTEIN 2)	S.X.	H.G.	Please select
0.38	44.2	ZmAffx.134.1.S1_at	AI667702	-	-	3e+0	At3g53010	-	S.X.	H.G.	Please select
0.32	33.4	Zm.622.1.S1_at	AF342809.1	tonoplast membrane integral protein ZmTIP3-2	-	4e-2	At2g01340	unknown protein	S.X.	H.G.	Please select
0.32	33.4	Zm.5976.2.S1_x_at	BG265782	-	-	3e+0	At5g40080	60S ribosomal protein-related	S.X.	H.G.	Please select
0.22	16.9	ZmAffx.195.1.S1_at	AI668458	-	-	1e+1	At5g21005	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
31.9	99.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.9	99.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.6	99.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.1	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.2	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.7	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.1	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.3	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.0	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.79	0	634	ZmAffx.96.1.A1_at	AI665410	hydroquinone glucosyltransferase	-	1e+1	At4g39130	dehydrin family protein	C.G.	S.X.	Please select
0.04	2e-2	38	Zm.4460.1.A1_at	AI714963	hypothetical protein LOC100278019	-	5e+0	At5g62520	SRO5 (SIMILAR TO RCD ONE 5)	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.3837.1.S1_at	AI978033	epoxide hydrolase 2	-	5e-2	At2g26750	epoxide hydrolase, putative	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.372.1.S1_at	AF058757.1	indeterminate growth1	-	9e-7	At1g14580	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.03	3e-1	34	Zm.16021.1.S1_at	CD995560	low-molecular-weight cysteine-rich protein LCR68	-	1e+0	At1g60300	apical meristem formation protein-related	C.G.	S.X.	Please select
0.03	3e-1	34	Zm.13015.1.S1_at	BG836655	-	-	4e-1	At1g75690	chaperone protein dnaJ-related	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.10437.1.S1_at	CO523513	-	-	2e+0	At2g24590	splicing factor, putative	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.9913.1.A1_at	BM337435	hypothetical protein LOC100273834	-	1e+0	At3g03826	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.8993.2.S1_at	CD219189	hypothetical protein LOC100194385	-	3e-8	At5g57655	xylose isomerase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+1	30	Arabidopsis thaliana	At4g39130	830068	dehydrin family protein	F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	HgAffx.13428.1.S1_at	CB374554	-	-	4e+0	At1g62980	ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18)	C.G.	S.X.	Please select
0.03	6e+0	30	Hordeum vulgare	EBma04_SQ003_H18_s_at	EBma04_SQ003_H18	-	-	4e+0	At4g19985	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select
0.02	4e-1	36	Oryza sativa	Os02g0285300	AK058613.1	-	DREPP plasma membrane polypeptide family protein	2e+0	At5g51720	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.213915.1.S1_s_at	pmrna27129	hypothetical protein	-	1e+0	At2g28060	protein kinase-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	3e+0	32	Triticum aestivum	TaAffx.78251.1.S1_at	CA735328	-	-	5e-1	At1g66620	seven in absentia (SINA) protein, putative	C.G.	S.X.	Please select
0.04	2e-1	34	Vitis vinifera	1608778_at	CF414759	-	-	2e-1	At4g16140	proline-rich family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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