Gene omics information

Query gene ID	ZmAffx.955.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.98	100.0	ZmAffx.955.1.S1_at	AI833505	-	-	8e-1	At2g47480	unknown protein	S.X.	H.G.	Please select
0.57	75.1	Zm.8311.2.A1_a_at	BM073622	-	-	4e+0	At4g23090	unknown protein	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.832.1.S1_at	AI770560	hypothetical protein LOC100274340	-	5e-2	At5g51990	CBF4 (C- REPEAT-BINDING FACTOR 4)	S.X.	H.G.	Please select
0.49	61.9	ZmAffx.843.1.S1_at	AI770603	-	-	2e-1	At1g69820	GGT3 (GAMMA-GLUTAMYL TRANSPEPTIDASE 3)	S.X.	H.G.	Please select
0.49	61.9	Zm.9940.1.A1_at	BM339055	-	-	3e-2	At5g26860	LON1 (LON PROTEASE 1)	S.X.	H.G.	Please select
0.47	59.9	Zm.4368.1.S1_at	CA404879	hypothetical protein LOC100217171	-	2e-21	At3g28900	60S ribosomal protein L34 (RPL34C)	S.X.	H.G.	Please select
0.47	59.9	ZmAffx.865.1.S1_at	AI770727	hypothetical protein LOC100191495	-	3e+0	At5g26830	threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)	S.X.	H.G.	Please select
0.47	59.9	Zm.13941.1.S1_at	CB380998	hypothetical protein LOC100277314	-	4e-5	At4g29735	unknown protein	S.X.	H.G.	Please select
0.46	58.4	Zm.1611.1.A1_at	AW787466	-	-	5e+0	At2g39790	mitochondrial glycoprotein family protein / MAM33 family protein	S.X.	H.G.	Please select
0.45	56.4	Zm.13588.1.A1_at	AY107800.1	-	-	1e+0	At4g34670	40S ribosomal protein S3A (RPS3aB)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.9	99.9	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.7	99.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.5	99.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.9	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.9	99.3	GSM320473	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.3	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.955.1.A1_at	AI833505	-	-	8e-1	At2g47480	unknown protein	C.G.	S.X.	Please select
0.17	2e-21	101	Zm.6017.1.A1_at	AI666208	hypothetical protein LOC100274747 /// hypothetical protein LOC100277021	-	2e+0	At4g08230	glycine-rich protein	C.G.	S.X.	Please select
0.12	6e-12	69	Zm.8490.1.A1_at	CB351020	hypothetical protein LOC100277467	-	4e+0	At2g23290	AtMYB70 (myb domain protein 70)	C.G.	S.X.	Please select
0.10	2e-8	57	Zm.10509.1.S1_at	AW055907	-	-	4e-1	At3g61980	serine protease inhibitor, Kazal-type family protein	C.G.	S.X.	Please select
0.02	9e-2	36	Zm.15527.1.A1_at	CK145031	hypothetical protein LOC100274385	-	4e-3	At2g30560	glycine-rich protein	C.G.	S.X.	Please select
0.03	9e-2	36	Zm.10022.1.A1_at	BM351693	-	-	3e-1	At5g05750	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.19221.1.S1_at	CO524032	-	-	5e-8	At1g11545	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	C.G.	S.X.	Please select
0.04	1e+0	32	ZmAffx.865.1.A1_at	AI770727	Hypothetical protein LOC100191495	-	3e+0	At3g03470	CYP89A9	C.G.	S.X.	Please select
0.04	1e+0	32	ZmAffx.865.1.S1_at	AI770727	hypothetical protein LOC100191495	-	3e+0	At5g26830	threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	8e-1	34	Arabidopsis thaliana	At2g47480	819361	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.87172.1.S1_at	BM143770	-	-	5e-9	At5g04130	DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative	C.G.	S.X.	Please select
0.24	1e-41	169	Hordeum vulgare	Contig15704_at	Contig15704	-	-	9e-2	At3g33494	unknown protein	C.G.	S.X.	Please select
0.24	7e-46	184	Oryza sativa	Os03g0302500	AK106296.1	-	Conserved hypothetical protein	1e+0	At1g48953	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Populus trichocarpa	PtpAffx.3173.9.S1_at	CV262060	hypothetical protein	-	2e-2	At4g35060	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.33	1e-30	133	Triticum aestivum	Ta.20492.3.S1_x_at	CA602684	-	-	2e+0	At4g24420	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.03	9e-1	32	Vitis vinifera	1608447_at	CB913704	hypothetical protein LOC100244219	-	3e-1	At3g44620	protein tyrosine phosphatase	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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