Gene omics information

Query gene ID	ZmAffx.954.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	ZmAffx.954.1.S1_at	AI833471	-	-	3e+0	At1g26480	GRF12 (GENERAL REGULATORY FACTOR 12)	S.X.	H.G.	Please select
0.92	99.2	Zm.12526.1.A1_x_at	AI734393	-	-	3e+0	At1g58150	unknown protein	S.X.	H.G.	Please select
0.71	88.2	Zm.15.1.A1_at	AY271262.1	NADP malic enzyme3	-	3e-16	At1g79750	ATNADP-ME4 (NADP-malic enzyme 4)	S.X.	H.G.	Please select
0.63	81.1	Zm.9952.1.A1_at	BM349898	-	-	6e+0	At5g46115	unknown protein	S.X.	H.G.	Please select
0.53	69.1	Zm.1690.1.A1_at	CK347441	density-regulated protein	-	4e-17	At5g11900	eukaryotic translation initiation factor SUI1 family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.17712.1.S1_at	CK370052	hypothetical protein LOC100275406	-	8e-20	At5g19855	unknown protein	S.X.	H.G.	Please select
0.43	52.8	ZmAffx.917.1.S1_at	AI782944	-	-	1e+1	At5g26810	pectinesterase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.2	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.2	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.3	99.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.2	99.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.0	99.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.2	99.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	801	ZmAffx.954.1.A1_at	AI833471	hypothetical protein LOC100273397	-	3e+0	At1g26480	GRF12 (GENERAL REGULATORY FACTOR 12)	C.G.	S.X.	Please select
0.02	9e-2	36	Zm.15798.1.S1_at	CK370673	-	-	5e-8	At1g19230	respiratory burst oxidase protein E (RbohE) / NADPH oxidase	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.2892.1.A1_at	BM332162	hypothetical protein LOC100276178	-	6e-1	At5g60750	CAAX amino terminal protease family protein	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.17662.1.S1_at	CO530536	-	-	5e-5	At5g67400	peroxidase 73 (PER73) (P73) (PRXR11)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.6228.1.A1_at	AI739920	-	-	1e+0	At1g64370	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	Zm.17662.2.S1_x_at	CK369405	-	-	1e+1	Atcg00660	-	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.10437.1.S1_at	CO523513	-	-	2e+0	At2g24590	splicing factor, putative	C.G.	S.X.	Please select
0.04	5e+0	30	ZmAffx.1118.2.A1_at	AW267189	-	-	8e-1	At2g27360	lipase, putative	C.G.	S.X.	Please select
0.04	5e+0	30	ZmAffx.1118.2.S1_at	AW267189	-	-	8e-1	At2g27360	lipase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At1g26480	839189	GRF12 (GENERAL REGULATORY FACTOR 12)	14-3-3 protein GF14iota (grf12)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e-1	36	Glycine max	GmaAffx.78127.1.S1_at	BM309536	-	-	4e-6	At3g16560	protein phosphatase 2C-related / PP2C-related	C.G.	S.X.	Please select
0.05	4e-1	34	Hordeum vulgare	Contig24253_at	Contig24253	-	-	4e+0	At4g25433	peptidoglycan-binding LysM domain-containing protein	C.G.	S.X.	Please select
0.13	5e-19	95	Oryza sativa	Os02g0563000	9630.m03383	-	-	9e+0	At4g14358	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Populus trichocarpa	PtpAffx.61998.1.A1_at	CV243246	-	-	6e-2	At5g11080	ubiquitin family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	8e-1	34	Triticum aestivum	TaAffx.98882.1.A1_at	CK216523	-	-	3e-1	At1g66890	-	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1611163_at	CF210269	-	-	4e+0	At5g35540	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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