Gene omics information

Query gene ID	ZmAffx.936.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.936.1.S1_at	AI677620	-	-	3e+0	At3g10490	anac052 (Arabidopsis NAC domain containing protein 52)	S.X.	H.G.	Please select
0.73	89.9	Zm.14476.2.A1_at	AY109949.1	Protein disulfide isomerase	-	1e-5	At3g54960	ATPDIL1-3 (PDI-LIKE 1-3)	S.X.	H.G.	Please select
0.67	85.8	Zm.17521.1.S1_at	CK370540	complex 1 protein containing protein	-	2e+0	At4g39340	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.13679.1.A1_at	AW424469	chemocyanin	-	9e-5	At1g72230	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select
0.44	55.7	ZmAffx.398.1.A1_at	AI676826	-	-	3e+0	At4g15150	glycine-rich protein	S.X.	H.G.	Please select
0.42	51.3	Zm.5313.2.A1_at	CA398418	60S ribosomal protein L12	-	9e-9	At2g37190	60S ribosomal protein L12 (RPL12A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
35.0	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
34.5	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
33.9	99.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.8	99.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.3	99.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.3	99.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	835	ZmAffx.936.1.A1_at	AI677620	hypothetical protein LOC100277133	-	3e+0	At3g10490	anac052 (Arabidopsis NAC domain containing protein 52)	C.G.	S.X.	Please select
0.01	4e-1	34	Zm.5643.1.A1_at	AY425817.1	mitogen activated protein kinase 6	-	6e-55	At5g19010	MPK16	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.12571.1.A1_at	AI833612	ribosome recycling factor	-	5e-1	At3g01800	ribosome recycling factor family protein / ribosome releasing factor family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.12571.1.S1_at	AY112399.1	-	-	5e-1	At3g01800	ribosome recycling factor family protein / ribosome releasing factor family protein	C.G.	S.X.	Please select
0.02	6e+0	30	Zm.7585.1.S1_at	BQ539058	hypothetical protein LOC100272281	-	2e+0	At5g66980	transcriptional factor B3 family protein	C.G.	S.X.	Please select
0.01	6e+0	30	Zm.5573.1.A1_at	BM080792	Methionine synthase	-	4e-121	At5g17920	ATMS1	C.G.	S.X.	Please select
0.01	6e+0	30	Zm.5495.1.S1_at	AY103870.1	-	-	1e-30	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	C.G.	S.X.	Please select
0.02	6e+0	30	Zm.18323.1.A1_at	CO532638	Hypothetical protein LOC100193167	-	5e-1	At4g27120	unknown protein	C.G.	S.X.	Please select
0.02	6e+0	30	Zm.18323.1.A1_a_at	CO532638	hypothetical protein LOC100193167	-	5e-1	At4g27120	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At3g10490	820213	anac052 (Arabidopsis NAC domain containing protein 52)	F:transcription factor activity;P:multicellular organismal development, pollen development;C:nucleolus;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	5e+0	32	Glycine max	GmaAffx.19507.1.S1_at	BQ610930	-	-	8e-1	At2g30060	Ran-binding protein 1b (RanBP1b)	C.G.	S.X.	Please select
0.05	2e+0	32	Hordeum vulgare	HV_CEb0012G15r2_at	HV_CEb0012G15r2	-	-	8e+0	At4g26880	stigma-specific Stig1 family protein	C.G.	S.X.	Please select
0.04	6e+0	32	Oryza sativa	Os04g0175200	9632.m00825	-	-	2e-1	At4g21610	LOL2 (LSD ONE LIKE 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.220077.1.S1_at	pmrna36380	hypothetical protein	-	8e-1	At4g19160	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	TaAffx.28998.1.S1_at	CA652779	-	-	2e+0	At3g13910	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1619941_at	CD802072	hypothetical protein LOC100259621	-	1e-3	At3g17510	CIPK1 (CBL-INTERACTING PROTEIN KINASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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