Gene omics information

Query gene ID	ZmAffx.927.1.S1_at
Gene name	hypothetical protein LOC100279113
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.69	86.5	ZmAffx.927.1.S1_at	AI795433	hypothetical protein LOC100279113	-	3e+0	At3g05935	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.2226.1.A1_at	BE129637	structural molecule	-	5e-7	At5g54110	ATMAMI (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED MANNITOL-INDUCED)	S.X.	H.G.	Please select
0.59	76.1	Zm.15800.3.S1_at	CK370046	-	-	4e-13	At4g13780	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	S.X.	H.G.	Please select
0.53	69.1	ZmAffx.1154.1.A1_at	AW424688	-	-	3e+0	At3g52480	unknown protein	S.X.	H.G.	Please select
0.53	69.1	Zm.13490.1.A1_at	CD997217	-	-	4e-8	At3g54670	TTN8 (TITAN8)	S.X.	H.G.	Please select
0.44	55.7	ZmAffx.501.1.A1_at	AI691747	-	-	8e-1	At5g62100	ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2)	S.X.	H.G.	Please select
0.44	55.7	ZmAffx.399.1.S1_at	AI676827	-	-	6e+0	At1g26921	unknown protein	S.X.	H.G.	Please select
0.43	52.8	Zm.11594.1.S1_at	BM379195	hypothetical protein LOC100277981	-	2e+0	At5g50175	unknown protein	S.X.	H.G.	Please select
0.43	52.8	Zm.876.1.S1_at	BG316815	-	-	4e+0	At5g45740	unknown protein	S.X.	H.G.	Please select
0.35	38.9	ZmAffx.1182.1.S1_at	AW927764	saposin-like type B, region 1 family protein	-	8e-4	At3g51730	saposin B domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.8	99.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.5	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.7	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.1	99.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.1	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.7	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.5	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.2	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	9e-2	36	Zm.18281.1.S1_at	BG840860	hypothetical protein LOC100277869	-	5e-1	At1g56530	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.7731.1.A1_at	AI612464	-	-	4e-1	At3g46820	TOPP5	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.6217.1.A1_at	BE129797	plant-specific domain TIGR01589 family protein	-	7e-1	At1g28600	lipase, putative	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.6136.1.A1_at	BM074048	early fruit mRNA	-	2e-7	At4g32610	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.19213.1.S1_at	CO518628	hypothetical protein LOC100192615	-	1e-2	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.18375.1.S1_at	CO531505	hypothetical protein LOC100192994	-	3e+0	At3g43960	cysteine proteinase, putative	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.18234.1.A1_at	AY104713.1	-	-	2e+0	At4g40045	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.18234.1.S1_at	AY104713.1	-	-	2e+0	At4g40045	unknown protein	C.G.	S.X.	Please select
0.03	2e+1	28	Zm.9237.1.A1_at	BM350875	-	-	4e-1	At3g07750	3' exoribonuclease family domain 1-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	3e+0	32	Arabidopsis thaliana	At3g05935	819763	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	GmaAffx.51252.1.S1_at	AW832372	-	-	9e-7	At1g75810	unknown protein	C.G.	S.X.	Please select
0.04	4e-1	34	Hordeum vulgare	Contig23982_at	Contig23982	-	-	9e-1	At4g10250	ATHSP22.0	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	Os07g0526400	BI806666	-	Chalcone synthase (EC 2.3.1.74)(Naringenin-chalcone synthase)	4e+0	At3g21920	pollen coat receptor kinase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e+0	32	Populus trichocarpa	PtpAffx.108513.1.A1_s_at	CV237713	hypothetical protein	-	8e-2	At4g06746	RAP2.9 (related to AP2 9)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	TaAffx.50764.1.S1_x_at	CA735651	-	-	6e-1	At5g16880	VHS domain-containing protein / GAT domain-containing protein	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1616004_at	CD802439	-	-	3e+0	At5g35375	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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