Gene omics information

Query gene ID	ZmAffx.925.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.925.1.S1_at	AI795348	-	-	8e-1	At1g43171	unknown protein	S.X.	H.G.	Please select
0.80	94.0	Zm.4625.1.A1_at	AI737394	-	-	8e-1	At1g78630	emb1473 (embryo defective 1473)	S.X.	H.G.	Please select
0.67	85.8	Zm.9555.2.A1_at	CK347442	-	-	3e+0	At2g22241	unknown protein	S.X.	H.G.	Please select
0.63	81.1	ZmAffx.786.1.A1_at	AI759096	-	-	3e-3	At1g72450	JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6)	S.X.	H.G.	Please select
0.40	48.5	Zm.16505.1.A2_at	CF633865	-	-	0	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	S.X.	H.G.	Please select
0.38	44.2	Zm.18993.1.S1_at	CO528827	-	-	3e-3	At2g10950	BSD domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.3	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.3	99.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.7	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.9	99.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.2	99.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.3	99.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	32	Zm.14765.1.A1_at	CB334162	-	-	5e+0	At4g10680	transcription factor IIB (TFIIB) family protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.12679.1.S1_at	BU571579	hypothetical protein LOC100217156	-	7e-1	At5g42510	disease resistance-responsive family protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.10473.1.A1_at	CA405106	Hypothetical protein LOC100192820	-	5e-2	At3g11220	Paxneb protein-related	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.9879.1.A1_at	BM339505	hypothetical protein LOC100217169	-	1e-1	At5g51220	ubiquinol-cytochrome C chaperone family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.6997.1.A1_at	BG874061	hypothetical protein LOC100191527	-	2e+0	At5g03980	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.6130.1.S1_at	CF056233	Hypothetical protein LOC100216775	-	3e-8	At4g14770	TCX2 (TESMIN/TSO1-LIKE CXC 2)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.5647.1.S1_at	AY122272.1	SET domain-containing protein SET104	-	2e+0	At1g02380	unknown protein	C.G.	S.X.	Please select
0.04	5e+0	30	Zm.5077.1.A1_at	AY106102.1	hypothetical protein LOC100217191	-	5e-2	At3g28070	nodulin MtN21 family protein	C.G.	S.X.	Please select
0.04	5e+0	30	Zm.5077.1.A1_x_at	AY106102.1	hypothetical protein LOC100217191	-	5e-2	At3g28070	nodulin MtN21 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	8e-1	34	Arabidopsis thaliana	At1g43171	6241420	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+0	34	Glycine max	GmaAffx.93605.1.S1_at	CF809330	-	-	6e-4	At1g23800	ALDH2B7	C.G.	S.X.	Please select
0.04	6e+0	30	Hordeum vulgare	Contig26206_at	Contig26206	-	-	7e-2	At4g21620	glycine-rich protein	C.G.	S.X.	Please select
0.03	6e+0	32	Oryza sativa	Os01g0927300	AK073201.1	-	-	4e-1	At4g33130	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.30964.2.A1_at	CV229568	hypothetical protein	-	5e+0	At5g48335	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	8e-1	34	Triticum aestivum	TaAffx.26007.1.S1_at	CA693241	-	-	8e-1	At1g51823	unknown protein	C.G.	S.X.	Please select
0.04	1e-2	38	Vitis vinifera	1614560_at	BQ797670	hypothetical protein LOC100267756	-	3e-10	At1g75180	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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