Gene omics information

Query gene ID	ZmAffx.918.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.918.1.A1_at	AI782957	-	-	8e-1	At3g06750	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.27	24.6	Zm.12157.1.S1_a_at	CF041742	PIF-like orf1	-	6e-1	At5g20180	ribosomal protein L36 family protein	S.X.	H.G.	Please select
0.22	16.9	Zm.4308.1.A1_at	AY112093.1	-	-	1e-1	At1g08390	nucleic acid binding	S.X.	H.G.	Please select
0.17	10.6	Zm.9409.1.A1_at	AY108164.1	-	-	3e-1	At1g79850	RPS17 (RIBOSOMAL PROTEIN S17)	S.X.	H.G.	Please select
0.14	7.7	Zm.1530.1.S1_at	BM080103	nucleus protein	-	6e+0	At5g48860	unknown protein	S.X.	H.G.	Please select
0.10	4.6	Zm.4020.2.A1_at	BM381719	-	-	8e-9	At5g48760	60S ribosomal protein L13A (RPL13aD)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
31.7	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.1	99.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.7	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.0	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.5	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	801	ZmAffx.918.1.S1_at	AI782957	hypothetical protein LOC100276424	-	8e-1	At3g06750	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.993.1.S1_at	BE512380	RNA-binding protein 8A	-	5e-1	At1g51510	Y14	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.1855.1.A1_at	CO520028	-	-	5e-2	At2g03230	-	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.8492.1.A1_at	CO518733	cyclin-dependent kinases regulatory subunit	-	4e-7	At2g27960	CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.7109.1.A1_at	CK826765	stem-specific protein TSJT1	-	4e-2	At1g75550	glycine-rich protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.6548.1.A1_at	BM073631	SHL1	-	3e-9	At4g22140	DNA binding / protein binding / zinc ion binding	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.3997.1.A1_at	AY109998.1	cyclin-dependent kinases regulatory subunit	-	6e-28	At2g27960	CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)	C.G.	S.X.	Please select
0.04	1e+0	32	Zm.3076.1.A1_at	CF624721	mitochondrial import inner membrane translocase subunit Tim10	-	2e-12	At2g29530	mitochondrial import inner membrane translocase (TIM10)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.3076.2.A1_at	CK827379	mitochondrial import inner membrane translocase subunit Tim10	-	4e-10	At2g29530	mitochondrial import inner membrane translocase (TIM10)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	8e-1	34	Arabidopsis thaliana	At3g06750	819860	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPFOBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	PsAffx.CL1777Contig1_at	PsAffx.CL1777Contig1	-	-	2e+0	At3g05580	serine/threonine protein phosphatase, putative	C.G.	S.X.	Please select
0.04	1e-1	36	Hordeum vulgare	HA12D17u_at	HA12D17u	-	-	3e-1	At4g22360	SWIB complex BAF60b domain-containing protein	C.G.	S.X.	Please select
0.07	1e-1	38	Oryza sativa	Os05g0456500	AK059391.1	-	Protein of unknown function DUF588 family protein	4e+0	At1g74230	GR-RBP5 (glycine-rich RNA-binding protein 5)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-3	44	Populus trichocarpa	PtpAffx.144438.1.S1_at	CX179959	hypothetical protein	-	6e-9	At2g26100	galactosyltransferase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	1e-8	59	Triticum aestivum	Ta.26586.1.A1_at	CD491290	-	-	2e-5	At3g53850	-	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1617674_at	CF208997	hypothetical protein LOC100263480	-	5e-18	At5g16270	SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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