Gene omics information

Query gene ID	ZmAffx.917.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	61.3	ZmAffx.917.1.S1_at	AI782944	-	-	1e+1	At5g26810	pectinesterase family protein	S.X.	H.G.	Please select
0.83	95.6	Zm.9952.1.A1_at	BM349898	-	-	6e+0	At5g46115	unknown protein	S.X.	H.G.	Please select
0.73	89.9	ZmAffx.908.1.S1_at	AI770943	hypothetical protein LOC100279225	-	8e-1	At5g41720	-	S.X.	H.G.	Please select
0.55	71.6	Zm.1690.1.A1_at	CK347441	density-regulated protein	-	4e-17	At5g11900	eukaryotic translation initiation factor SUI1 family protein	S.X.	H.G.	Please select
0.53	69.1	Zm.10674.1.A1_at	BM380580	hypothetical protein LOC100194243	-	1e+0	At4g25720	QC (GLUTAMINYL CYCLASE)	S.X.	H.G.	Please select
0.50	65.7	Zm.17712.1.S1_at	CK370052	hypothetical protein LOC100275406	-	8e-20	At5g19855	unknown protein	S.X.	H.G.	Please select
0.44	55.7	ZmAffx.848.1.A1_at	AI770631	-	-	8e-1	At1g22720	wall-associated kinase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
59.9	100.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
39.7	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
37.8	99.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.1	99.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.2	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.7	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	658	ZmAffx.917.1.A1_at	AI782944	-	-	1e+1	At5g26810	pectinesterase family protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.6782.1.A1_at	CF061901	hypothetical protein LOC100193477	-	5e-92	At5g16070	chaperonin, putative	C.G.	S.X.	Please select
0.01	5e+0	30	ZmAffx.1542.1.S1_at	40794996-19	-	-	1e+0	At1g80690	unknown protein	C.G.	S.X.	Please select
0.05	5e+0	30	ZmAffx.1117.1.A1_at	AW257962	-	-	2e+0	At3g15150	zinc ion binding	C.G.	S.X.	Please select
0.05	5e+0	30	ZmAffx.1117.1.S1_at	AW257962	-	-	2e+0	At3g15150	zinc ion binding	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.8737.1.A1_at	BM075427	-	-	2e+0	At1g62080	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.5388.1.S1_at	AW453245	hypothetical protein LOC100193632	-	6e-23	At3g09180	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.4191.1.A1_at	AY106954.1	hypothetical protein LOC100280227	-	3e-10	At3g13340	WD-40 repeat family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.19011.2.A1_a_at	AY108328.1	decarboxylase family protein	-	2e-3	At2g23320	WRKY15	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+1	30	Arabidopsis thaliana	At5g26810	832739	pectinesterase family protein	F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	9e-1	34	Glycine max	GmaAffx.84902.1.S1_at	AW567598	-	-	8e-1	At4g26280	sulfotransferase family protein	C.G.	S.X.	Please select
0.03	5e+0	30	Hordeum vulgare	Contig20523_at	Contig20523	-	-	1e+0	At5g65390	AGP7	C.G.	S.X.	Please select
0.03	5e+0	32	Oryza sativa	Os07g0548300	NM_185739.1	-	CRP1	4e-6	At5g42310	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.222191.1.S1_s_at	pmrna39445	hypothetical protein	-	3e-1	At2g21220	auxin-responsive protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	Ta.22185.1.S1_at	CA729054	-	-	4e+0	At4g29460	phospholipase A2 gamma, secretory low molecular weight	C.G.	S.X.	Please select
0.04	8e-1	32	Vitis vinifera	1614875_at	CF518552	-	-	4e+0	At5g57900	SKIP1 (SKP1 INTERACTING PARTNER 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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