Gene omics information

Query gene ID	ZmAffx.912.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	ZmAffx.912.1.S1_at	AI770956	-	-	5e-2	At4g01580	transcriptional factor B3 family protein	S.X.	H.G.	Please select
0.44	55.7	ZmAffx.1104.1.A1_at	AW191449	hypothetical protein LOC100280210	-	2e-1	At2g01960	TET14 (TETRASPANIN14)	S.X.	H.G.	Please select
0.40	48.5	Zm.3441.1.A1_at	CN844939	hypothetical protein LOC100193908	-	4e-1	At4g33467	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.8233.3.S1_x_at	BQ294345	hypothetical protein LOC100194283	-	5e-7	At4g31580	SRZ-22	S.X.	H.G.	Please select
0.23	18.6	Zm.8824.1.A1_at	BM347277	FK506-binding protein 4	-	2e-6	At3g55520	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	S.X.	H.G.	Please select
0.22	16.9	Zm.10554.1.A1_at	CA398680	-	-	3e-10	At2g44090	-	S.X.	H.G.	Please select
0.20	14.2	Zm.17818.1.A1_at	CK145213	-	-	6e+0	At5g52470	FIB1 (FIBRILLARIN 1)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.8	99.8	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.7	99.7	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.1	99.6	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.0	99.6	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.4	99.4	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.6	99.3	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.2	99.1	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	753	ZmAffx.912.1.A1_at	AI770956	-	-	5e-2	At4g01580	transcriptional factor B3 family protein	C.G.	S.X.	Please select
0.01	3e-1	34	Zm.14973.1.A1_at	BM075591	hypothetical protein LOC100275738	-	1e-9	At1g10280	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.9973.1.A1_at	BM350441	-	-	2e+0	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.4738.1.A1_at	CF013255	-	-	2e-23	At1g14610	TWN2 (TWIN 2)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.4738.1.A1_a_at	CF013255	-	-	2e-23	At1g14610	TWN2 (TWIN 2)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.4738.1.A1_x_at	CF013255	-	-	2e-23	At1g14610	TWN2 (TWIN 2)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.1945.2.A1_a_at	AY106325.1	Rho-related protein from plants 2 /// Rho-related protein from plants 9	-	3e-46	At4g35950	ARAC6 (ARABIDOPSIS RAC-LIKE 6)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.15819.1.A1_at	AY163377.1	Rho-related protein from plants 9	-	3e-46	At4g35950	ARAC6 (ARABIDOPSIS RAC-LIKE 6)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.15524.1.A1_at	CF632238	-	-	4e-1	At5g46780	VQ motif-containing protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-2	38	Arabidopsis thaliana	At4g01580	828118	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e-1	36	Glycine max	Gma.1288.2.S1_a_at	BE473596	-	-	2e-1	At2g22250	aminotransferase class I and II family protein	C.G.	S.X.	Please select
0.04	4e-1	34	Hordeum vulgare	HVSMEn0019B10f_s_at	HVSMEn0019B10f	-	-	9e-1	At4g21450	vesicle-associated membrane family protein / VAMP family protein	C.G.	S.X.	Please select
0.04	4e-1	36	Oryza sativa	OsAffx.6191.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+0	34	Populus trichocarpa	PtpAffx.223822.1.S1_x_at	pmrna42030	hypothetical protein	-	1e-1	At2g28200	nucleic acid binding / transcription factor/ zinc ion binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	8e-1	34	Triticum aestivum	TaAffx.6282.1.S1_at	CA688907	-	-	2e-1	At4g27670	HSP21 (HEAT SHOCK PROTEIN 21)	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1620335_at	CF404179	-	-	1e+0	At2g02060	transcription factor	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage