Gene omics information

Query gene ID	ZmAffx.893.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.893.1.A1_at	AI770864	-	-	3e+0	At2g17500	auxin efflux carrier family protein	S.X.	H.G.	Please select
0.36	41.3	Zm.8311.2.A1_a_at	BM073622	-	-	4e+0	At4g23090	unknown protein	S.X.	H.G.	Please select
0.27	24.6	Zm.15242.1.A1_at	BM340075	-	-	1e+1	At3g16712	unknown protein	S.X.	H.G.	Please select
0.20	14.2	Zm.2805.1.A1_at	AW352682	hypothetical protein LOC100274443	-	5e+0	At4g13266	unknown protein	S.X.	H.G.	Please select
0.10	4.6	Zm.14692.1.A1_s_at	BQ539260	hypothetical protein LOC100276042	-	5e+0	At1g09195	-	S.X.	H.G.	Please select
0.08	3.4	Zm.1368.1.A1_at	CA399867	calcineurin B-like protein 3	-	3e-40	At5g55990	CBL2 (CALCINEURIN B-LIKE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.7	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.8	99.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.5	99.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.9	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.8	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.4	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.4	99.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.7	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.893.1.S1_at	AI770864	-	-	8e-1	At1g19850	MP (MONOPTEROS)	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.14070.1.S1_at	AY104288.1	hypothetical protein LOC100272584	-	1e-3	At5g40280	ERA1 (ENHANCED RESPONSE TO ABA 1)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.9991.1.S1_at	BQ619114	hypothetical protein LOC100191513	-	7e-17	At5g09300	2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.7131.1.A1_at	AY108795.1	hypothetical protein LOC100191916	-	1e-9	At3g06170	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select
0.04	5e+0	30	ZmAffx.1026.1.S1_at	AI881620	Hypothetical protein LOC100193718	-	8e-1	At1g55660	F-box family protein	C.G.	S.X.	Please select
0.04	5e+0	30	ZmAffx.1026.1.A1_at	AI881620	hypothetical protein LOC100193718	-	3e+0	At5g27570	WD-40 repeat family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.8344.1.A1_at	CO526131	ZIM motif family protein	-	5e-4	At1g70700	TIFY7	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.8031.1.A1_at	BQ539285	-	-	9e-15	At1g08720	EDR1 (ENHANCED DISEASE RESISTANCE 1)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.498.1.S1_at	AF236374.1	hypersensitive-induced response protein	-	2e-10	At3g01290	band 7 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	32	Arabidopsis thaliana	At2g17500	816256	auxin efflux carrier family protein	F:auxin:hydrogen symporter activity;P:auxin polar transport;C:endomembrane system, integral to membrane;PFOBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.52582.1.S1_at	BM093609	-	-	1e-3	At5g22250	CCR4-NOT transcription complex protein, putative	C.G.	S.X.	Please select
0.05	4e-1	34	Hordeum vulgare	HVSMEf0020A12r2_s_at	HVSMEf0020A12r2	-	-	6e+0	At4g03945	enzyme inhibitor/ pectinesterase	C.G.	S.X.	Please select
0.04	3e-20	99	Oryza sativa	Os04g0664400	AB071292.1	-	Auxin response factor 1	5e-10	At1g19850	MP (MONOPTEROS)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e+0	34	Populus trichocarpa	PtpAffx.208958.1.S1_at	pmrna17756	-	-	6e-3	At3g25855	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	8e-1	34	Triticum aestivum	TaAffx.132745.1.S1_at	BQ606481	-	-	4e+0	At2g20618	-	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1616499_at	AY427126.1	-	-	5e-1	At3g07760	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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