Gene omics information

Query gene ID	ZmAffx.89.1.A1_at
Gene name	hypothetical protein LOC100277768
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	ZmAffx.89.1.A1_at	AI665353	hypothetical protein LOC100277768	-	1e+1	At5g20560	beta-1,3-glucanase, putative	S.X.	H.G.	Please select
0.77	92.1	Zm.18157.1.A1_at	CO533028	-	-	2e-1	At4g20290	unknown protein	S.X.	H.G.	Please select
0.71	88.2	Zm.5813.1.A1_at	CF056763	hypothetical protein LOC100191474	-	8e-32	At5g55310	TOP1BETA (DNA TOPOISOMERASE 1 BETA)	S.X.	H.G.	Please select
0.67	85.8	Zm.4171.1.A1_at	BG841769	isoamyl acetate-hydrolyzing esterase	-	3e+0	At1g69190	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/ dihydropteroate synthase	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.105.1.S1_at	AI665537	-	-	3e+0	At4g20000	VQ motif-containing protein	S.X.	H.G.	Please select
0.61	79.5	ZmAffx.901.1.A1_at	AI770894	-	-	1e+1	At5g47455	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.1	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.3	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.0	99.5	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.3	99.2	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320469	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320473	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.89.1.S1_at	AI665353	-	-	1e+1	At5g20560	beta-1,3-glucanase, putative	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.534.1.A1_at	AF276086.1	protein kinase AKINbetagamma-2	-	3e-10	At1g09020	SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.534.1.A1_x_at	AF276086.1	protein kinase AKINbetagamma-2	-	3e-10	At1g09020	SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.2673.1.S1_at	CA401457	TLD family protein	-	5e-2	At4g39870	-	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.235.1.S1_at	AJ011614.1	SBP-domain protein1	-	1e-5	At2g33810	SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.18510.1.A1_at	CF625713	anthocyanidin 3-O-glucosyltransferase	-	2e-2	At3g21750	UGT71B1 (UDP-GLUCOSYL TRANSFERASE 71B1)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.6311.1.S1_at	CO517486	hypothetical protein LOC100279296	-	2e-1	At5g67490	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.5957.1.S1_at	AY105442.1	hypothetical protein LOC100191140	-	1e-5	At5g08280	HEMC (HYDROXYMETHYLBILANE SYNTHASE)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.5016.1.A1_at	CF630064	-	-	2e-19	At2g04030	CR88	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+1	30	Arabidopsis thaliana	At5g20560	832178	beta-1,3-glucanase, putative	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	Gma.13878.1.S1_at	CD408791	-	-	5e+0	At5g01070	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	4e-1	34	Hordeum vulgare	HV_CEa0014J24r2_at	HV_CEa0014J24r2	-	-	1e+0	At5g65130	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.03	2e-3	44	Oryza sativa	Os01g0897000	BI808037	-	Protein kinase domain containing protein	1e-33	At3g54180	CDKB1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e+0	32	Populus trichocarpa	PtpAffx.220044.1.S1_at	pmrna36313	hypothetical protein	-	5e-1	At5g50335	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e+0	32	Triticum aestivum	TaAffx.31585.1.S1_at	CA612461	-	-	1e-1	At5g64813	LIP1 (Light Insensitive Period1)	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1612545_at	CB007109	-	-	1e+1	At5g08190	NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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