Gene omics information

Query gene ID	ZmAffx.886.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	90.8	ZmAffx.886.1.A1_at	AI770831	-	-	8e-1	At5g22220	-	S.X.	H.G.	Please select
0.61	79.5	ZmAffx.962.1.A1_at	AI833777	hypothetical protein LOC100275523	-	3e-22	At1g64680	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.18012.1.A1_at	CK827313	-	-	2e-3	At5g48950	thioesterase family protein	S.X.	H.G.	Please select
0.44	55.7	Zm.15.1.A1_at	AY271262.1	NADP malic enzyme3	-	3e-16	At1g79750	ATNADP-ME4 (NADP-malic enzyme 4)	S.X.	H.G.	Please select
0.36	41.3	Zm.3124.1.S1_at	AY109771.1	CONSTANS interacting protein 4	-	1e+1	At5g37770	TCH2 (TOUCH 2)	S.X.	H.G.	Please select
0.26	22.7	Zm.17712.1.S1_at	CK370052	hypothetical protein LOC100275406	-	8e-20	At5g19855	unknown protein	S.X.	H.G.	Please select
0.22	16.9	ZmAffx.848.1.A1_at	AI770631	-	-	8e-1	At1g22720	wall-associated kinase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.6	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.3	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.0	99.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.6	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.3	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.2	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.8	99.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.6	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	761	ZmAffx.886.1.S1_at	AI770831	-	-	8e-1	At5g22220	-	C.G.	S.X.	Please select
0.02	9e-2	36	Zm.9856.1.S1_at	BM381423	hypothetical protein LOC100272496	-	4e-2	At5g40150	peroxidase, putative	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.8426.1.A1_at	BM347536	hypothetical protein LOC100216659	-	8e-1	At1g71691	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.3666.1.A1_at	BG873898	hypothetical protein LOC100191942	-	1e-2	At2g13560	malate oxidoreductase, putative	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.9772.1.A1_at	BM340296	hypothetical protein LOC100273847	-	5e+0	At3g43740	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.9181.1.A1_at	CA402930	hypothetical protein LOC100192510	-	5e-2	At2g28710	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.8464.1.S1_at	AY107894.1	hypothetical protein LOC100191430	-	1e-8	At2g35860	FLA16 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 PRECURSOR)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.7782.1.A1_at	BM079881	-	-	3e-1	At5g66250	kinectin-related	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.3102.1.A1_at	CF636375	VAMP protein SEC22	-	2e+0	At5g18362	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-1	34	Arabidopsis thaliana	At5g22220	832283	-	-	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e-3	42	Glycine max	Gma.8381.2.S1_at	BQ742351	-	-	1e-2	At4g29850	unknown protein	C.G.	S.X.	Please select
0.04	1e-1	36	Hordeum vulgare	Contig19958_at	Contig19958	-	-	4e+0	At3g28990	unknown protein	C.G.	S.X.	Please select
0.08	3e-2	40	Oryza sativa	Os07g0685300	AK067645.1	-	Phosphate starvation regulator protein (Regulatoryprotein of P- starvation acclimation response Psr1)	5e-11	At5g18240	MYR1 (MYb-related protein 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-2	40	Populus trichocarpa	Ptp.1822.1.A1_at	CK093118	hypothetical protein	-	8e-27	At1g68410	protein phosphatase 2C-related / PP2C-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e-2	40	Triticum aestivum	Ta.21750.1.S1_x_at	CA700361	-	-	1e+1	At3g42473	LCR47 (Low-molecular-weight cysteine-rich 47)	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1609764_at	CB978631	-	-	3e-14	At3g48710	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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