Gene omics information

Query gene ID	ZmAffx.87.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	90.3	ZmAffx.87.1.A1_at	AI665344	-	-	1e+1	At5g39330	unknown protein	S.X.	H.G.	Please select
0.61	79.5	Zm.1341.1.A1_at	BF729181	PAP fibrillin family protein	-	4e+0	At4g35390	AGF1 (AT-hook protein of GA feedback 1)	S.X.	H.G.	Please select
0.61	79.5	Zm.18157.1.A1_at	CO533028	-	-	2e-1	At4g20290	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.34.2.S1_at	AY103769.1	-	-	1e-13	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	S.X.	H.G.	Please select
0.57	75.1	ZmAffx.105.1.S1_at	AI665537	-	-	3e+0	At4g20000	VQ motif-containing protein	S.X.	H.G.	Please select
0.56	74.4	ZmAffx.901.1.A1_at	AI770894	-	-	1e+1	At5g47455	unknown protein	S.X.	H.G.	Please select
0.53	69.1	Zm.4171.1.A1_at	BG841769	isoamyl acetate-hydrolyzing esterase	-	3e+0	At1g69190	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/ dihydropteroate synthase	S.X.	H.G.	Please select
0.52	67.3	ZmAffx.900.1.A1_at	AI770893	-	-	1e+1	At5g19480	unknown protein	S.X.	H.G.	Please select
0.51	66.4	Zm.1368.1.A1_at	CA399867	calcineurin B-like protein 3	-	3e-40	At5g55990	CBL2 (CALCINEURIN B-LIKE 2)	S.X.	H.G.	Please select
0.50	65.7	Zm.5813.1.A1_at	CF056763	hypothetical protein LOC100191474	-	8e-32	At5g55310	TOP1BETA (DNA TOPOISOMERASE 1 BETA)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.0	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.9	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.6	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.4	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.5	99.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.0	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.6	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.87.1.S1_at	AI665344	-	-	1e+1	At5g39330	unknown protein	C.G.	S.X.	Please select
0.10	9e-8	56	Zm.19052.1.A1_at	BM331958	-	-	1e+0	At1g29780	NLI interacting factor (NIF) family protein	C.G.	S.X.	Please select
0.08	6e-6	50	Zm.19266.1.A1_at	CO521373	-	-	2e+1	At5g20570	RBX1 (RING-BOX 1)	C.G.	S.X.	Please select
0.08	6e-6	50	Zm.19266.1.A1_x_at	CO521373	-	-	2e+1	At5g20570	RBX1 (RING-BOX 1)	C.G.	S.X.	Please select
0.04	9e-2	36	Zm.11642.1.A1_at	CO532952	protein kinase	-	3e-1	At5g23680	sterile alpha motif (SAM) domain-containing protein	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.5882.1.A1_at	AI637237	-	-	2e-1	At1g52880	NAM (NO APICAL MERISTEM)	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.2244.1.S1_a_at	CF348841	hypothetical protein LOC100279724	-	6e-1	At1g49010	myb family transcription factor	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.14805.1.A1_at	BM380633	hypothetical protein LOC100280247	-	3e-6	At1g01720	ATAF1	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.10172.1.A1_at	CO532781	hypothetical protein LOC100273092	-	2e-1	At1g01720	ATAF1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+1	30	Arabidopsis thaliana	At5g39330	833929	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	GmaAffx.32011.1.S1_at	BI701198	-	-	1e+0	At4g09270	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	HV_CEa0012H15r2_at	HV_CEa0012H15r2	-	-	4e+0	At1g11450	nodulin MtN21 family protein	C.G.	S.X.	Please select
0.05	2e+0	34	Oryza sativa	OsAffx.24699.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.653.25.S1_at	CV271340	-	-	8e-1	At3g62190	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	8e-1	34	Triticum aestivum	Ta.13817.1.S1_at	CD868374	-	-	1e+0	At1g07600	MT1A (METALLOTHIONEIN 1A)	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1614822_at	CB342269	-	-	4e+0	At4g08980	F-box family protein (FBW2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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