Gene omics information

Query gene ID	ZmAffx.855.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.855.1.S1_at	AI770678	-	-	1e+1	At5g23035	-	S.X.	H.G.	Please select
0.67	85.8	Zm.5495.1.S1_at	AY103870.1	-	-	1e-30	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.1036.1.A1_at	AI881726	-	-	1e-1	At2g43795	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.2146.1.A1_at	AW287813	-	-	5e+0	At5g35475	-	S.X.	H.G.	Please select
0.44	55.7	Zm.5775.1.A1_at	AI649573	-	-	1e+1	At3g06600	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.2463.2.S1_at	AW191411	hypothetical protein LOC100193981	-	3e+0	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.9	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.8	99.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.9	99.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
8.2	98.0	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
7.0	97.7	GSM202316	Mo17xB73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.48	2e-107	387	ZmAffx.855.1.A1_at	AI770678	-	-	1e+1	At5g23035	-	C.G.	S.X.	Please select
0.05	3e-1	34	ZmAffx.1125.1.A1_at	AW288880	-	-	3e+0	At5g57520	ZFP2 (ZINC FINGER PROTEIN 2)	C.G.	S.X.	Please select
0.05	3e-1	34	ZmAffx.1125.1.S1_at	AW288880	-	-	3e+0	At5g57520	ZFP2 (ZINC FINGER PROTEIN 2)	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.4102.1.S1_at	AI834676	-	-	3e+0	At4g39340	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	ZmAffx.1453.1.S1_at	11990232-20	-	-	3e-46	Atcg00330	-	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.5476.3.A1_at	AI676920	hypothetical protein LOC100272988	-	3e-75	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.34.5.A1_at	AI734535	-	-	4e-2	At2g36950	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.34.5.A1_x_at	AI734535	-	-	4e-2	At2g36950	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.15907.1.A1_at	AI691196	-	-	3e-1	At5g56540	AGP14 (ARABINOGALACTAN PROTEIN 14)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+1	30	Arabidopsis thaliana	At5g23035	3770692	-	Encodes a defensin-like (DEFL) family protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	GmaAffx.19636.1.S1_at	BQ785268	-	-	2e-11	At1g72120	transporter	C.G.	S.X.	Please select
0.04	4e-1	34	Hordeum vulgare	HU14G14r_s_at	HU14G14r	-	-	5e-3	At5g24860	FPF1 (FLOWERING PROMOTING FACTOR 1)	C.G.	S.X.	Please select
0.03	3e-2	40	Oryza sativa	Os06g0700000	AK102835.1	-	Proteinase inhibitor I9, subtilisin propeptidedomain containing protein	1e-53	At2g19170	SLP3	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e-3	42	Populus trichocarpa	PtpAffx.222545.1.S1_s_at	pmrna40055	nbs-lrr resistance protein /// nbs-lrr resistance protein	-	4e+0	At5g18850	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	TaAffx.109141.1.S1_at	CA679501	-	-	7e-2	At2g44730	transcription factor	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1619214_at	CF207139	-	-	4e+0	At5g67500	VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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