Gene omics information

Query gene ID	ZmAffx.836.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	ZmAffx.836.1.A1_at	AI770581	-	-	2e-1	At3g24350	SYP32 (SYNTAXIN OF PLANTS 32)	S.X.	H.G.	Please select
0.67	85.8	Zm.4230.1.S1_at	CO523811	-	-	4e-5	At1g17650	GLYR2 (GLYOXYLATE REDUCTASE 2)	S.X.	H.G.	Please select
0.44	55.7	Zm.6779.2.S1_a_at	AY107207.1	-	-	3e+0	At4g21460	unknown protein	S.X.	H.G.	Please select
0.38	44.2	Zm.13982.1.S1_at	AY104726.1	hypothetical protein LOC100272291	-	2e-17	At2g25840	OVA4 (ovule abortion 4)	S.X.	H.G.	Please select
0.32	33.4	ZmAffx.70.1.A1_at	AI665164	-	-	8e-1	At2g37780	DC1 domain-containing protein	S.X.	H.G.	Please select
0.31	31.6	ZmAffx.788.1.A1_at	AI759113	-	-	8e-1	At4g33925	unknown protein	S.X.	H.G.	Please select
0.26	22.7	Zm.11935.1.A1_at	BM381982	-	-	6e-1	At1g25420	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
41.3	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.7	99.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.6	99.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.1	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.6	99.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.6	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.1	99.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.9	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.836.1.S1_at	AI770581	-	-	8e-1	At5g16420	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.02	2e-2	38	Zm.512.2.A1_s_at	AF250047.1	nucleosome/chromatin assembly factor group C /// nucleosome/chromatin assembly factor C	-	1e-42	At2g19520	FVE	C.G.	S.X.	Please select
0.02	2e-2	38	Zm.512.1.A1_at	AF384037.1	nucleosome/chromatin assembly factor C	-	9e-69	At2g19520	FVE	C.G.	S.X.	Please select
0.02	2e-2	38	Zm.512.1.A1_a_at	AF384037.1	nucleosome/chromatin assembly factor C	-	9e-69	At2g19520	FVE	C.G.	S.X.	Please select
0.01	2e-2	38	Zm.16092.1.S1_at	AY100481.1	nucleosome/chromatin assembly factor group C	-	3e-63	At2g19520	FVE	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.7.1.S1_at	AW787278	glyceraldehyde-3-phosphate dehydrogenase1	-	3e-9	At1g12900	GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.9768.1.A1_at	BM338514	hypothetical protein LOC100273687	-	3e-2	At1g29730	ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.8672.1.A1_at	CF629584	hypothetical protein LOC100192472	-	8e-22	At3g03120	ATARFB1C (ADP-ribosylation factor B1C)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.16790.1.S1_at	AY110991.1	-	-	1e-2	At2g43150	proline-rich extensin-like family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	Arabidopsis thaliana	At3g24350	822024	SYP32 (SYNTAXIN OF PLANTS 32)	member of Glycoside Hydrolase Family 17	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	GmaAffx.64109.1.S1_at	BI785328	-	-	2e-1	At3g24100	-	C.G.	S.X.	Please select
0.09	8e-24	109	Hordeum vulgare	Contig8157_at	Contig8157	-	-	2e-2	At3g59290	epsin N-terminal homology (ENTH) domain-containing protein	C.G.	S.X.	Please select
0.08	9e-36	151	Oryza sativa	Os02g0806600	AK067491.1	-	Chitinase (Fragment)	1e-7	At3g59290	epsin N-terminal homology (ENTH) domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.9749.1.A1_at	DN491489	hypothetical protein	-	4e+0	At5g04790	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	8e-1	34	Triticum aestivum	TaAffx.82121.1.S1_at	CA677343	-	-	4e-2	At1g12900	GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2)	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1616799_at	CB974820	-	-	2e+0	At4g21870	26.5 kDa class P-related heat shock protein (HSP26.5-P)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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