Gene omics information

Query gene ID	ZmAffx.834.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.834.1.A1_at	AI770566	-	-	8e-1	At1g54420	unknown protein	S.X.	H.G.	Please select
0.71	88.2	ZmAffx.757.1.A1_at	AI745972	-	-	3e+0	At4g32960	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.15437.1.S1_at	CD219447	hypothetical protein LOC100191830	-	6e+0	At5g37670	15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI)	S.X.	H.G.	Please select
0.50	65.7	Zm.1960.1.A1_at	AW566154	palmitoyltransferase swf1	-	4e-1	At3g04970	zinc finger (DHHC type) family protein	S.X.	H.G.	Please select
0.35	38.9	Zm.1342.1.S1_at	BG842254	-	-	4e-5	At1g23230	unknown protein	S.X.	H.G.	Please select
0.29	28.1	Zm.18465.1.A1_at	CO530071	-	-	1e+1	At4g09100	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.4	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.3	99.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.3	99.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.8	99.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.1	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.1	99.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.2	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.1	99.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.6	99.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	773	ZmAffx.834.1.S1_at	AI770566	hypothetical protein LOC100277584	-	8e-1	At1g54420	unknown protein	C.G.	S.X.	Please select
0.02	5e-3	40	Zm.16482.2.A1_at	BM337760	-	-	9e-19	At3g09630	60S ribosomal protein L4/L1 (RPL4A)	C.G.	S.X.	Please select
0.05	2e-2	38	ZmAffx.967.1.S1_s_at	AI668376	Hypothetical protein LOC100193584	-	1e+1	At5g29613	unknown protein	C.G.	S.X.	Please select
0.02	2e-2	38	Zm.4870.1.A1_a_at	CK985786	dehydrin	-	7e-4	At3g50980	XERO1 (DEHYDRIN XERO 1)	C.G.	S.X.	Please select
0.02	2e-2	38	Zm.4870.1.A1_x_at	CK985786	dehydrin	-	7e-4	At3g50980	XERO1 (DEHYDRIN XERO 1)	C.G.	S.X.	Please select
0.02	2e-2	38	Zm.4870.2.S1_a_at	CF023956	dehydrin	-	3e-6	At3g50980	XERO1 (DEHYDRIN XERO 1)	C.G.	S.X.	Please select
0.02	2e-2	38	Zm.3536.1.A1_at	BM340706	glucan endo-1,3-beta-glucosidase 4	-	3e+0	At2g18050	HIS1-3 (HISTONE H1-3)	C.G.	S.X.	Please select
0.05	2e-2	38	Zm.2157.8.S1_at	BI096578	Hypothetical protein LOC100193584	-	8e-1	At3g66654	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	C.G.	S.X.	Please select
0.02	2e-2	38	Zm.16490.1.S1_at	CO526480	3-methyl-2-oxobutanoate hydroxymethyltransferase	-	2e-7	At3g61530	PANB2	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	8e-1	34	Arabidopsis thaliana	At1g54420	841884	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	PsAffx.CL1861Contig1_at	PsAffx.CL1861Contig1	-	-	8e-1	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.05	1e-1	36	Hordeum vulgare	EBem05_SQ004_K20_at	EBem05_SQ004_K20	-	-	3e+0	At2g17442	unknown protein	C.G.	S.X.	Please select
0.09	9e-36	151	Oryza sativa	Os03g0339700	AK073084.1	-	Plant protein of unknown function DUF827 familyprotein	1e-6	At3g56270	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.4010.2.A1_a_at	CV254509	hypothetical protein	-	9e-8	At2g27080	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	5e-2	38	Triticum aestivum	TaAffx.112055.1.S1_at	CA627392	-	-	1e+0	At5g04760	myb family transcription factor	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1607965_at	BQ796492	hypothetical protein LOC100242951	-	2e+0	Atmg00480	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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