Gene omics information

Query gene ID	ZmAffx.830.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	65.7	ZmAffx.830.1.A1_at	AI770534	-	-	6e+0	At5g40930	TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4)	S.X.	H.G.	Please select
0.50	65.7	Zm.17506.1.A1_at	BM078795	hypothetical protein LOC100191925	-	1e+0	At5g65205	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select
0.46	58.4	ZmAffx.716.1.S1_at	AI739804	transparent testa 12 protein	-	2e-1	At4g03240	FH (FRATAXIN HOMOLOG)	S.X.	H.G.	Please select
0.42	51.3	Zm.8806.1.A1_at	BM075728	-	-	2e+1	At5g35640	-	S.X.	H.G.	Please select
0.32	33.4	Zm.482.1.S1_at	AF073488.1	bifunctional dihydrofolate reductase-thymidylate synthase	-	1e-50	At2g16370	THY-1 (THYMIDYLATE SYNTHASE 1)	S.X.	H.G.	Please select
0.27	24.6	Zm.19280.1.S1_at	CO524637	hypothetical protein LOC100276261	-	4e-6	At5g39660	CDF2 (CYCLING DOF FACTOR 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
45.8	100.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
38.8	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.9	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.9	99.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.7	99.4	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.5	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	4e-110	395	ZmAffx.830.1.S1_at	AI770534	-	-	6e+0	At5g40930	TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4)	C.G.	S.X.	Please select
0.10	1e-8	57	Zm.4852.2.A1_at	AI770453	Hypothetical protein LOC100192969	-	3e+0	At3g16300	integral membrane family protein	C.G.	S.X.	Please select
0.10	1e-8	57	Zm.4852.2.S1_at	AI770453	hypothetical protein LOC100192969	-	3e+0	At3g16300	integral membrane family protein	C.G.	S.X.	Please select
0.03	3e-6	50	Zm.13537.1.S1_at	AY108307.1	hypothetical protein LOC100216867	-	1e-9	At1g23210	AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6)	C.G.	S.X.	Please select
0.01	6e-1	32	Zm.300.1.A1_at	AY107888.1	polyamine oxidase1	-	1e+1	At5g15600	SP1L4 (SPIRAL1-LIKE4)	C.G.	S.X.	Please select
0.02	3e+0	30	Zm.616.1.S1_at	AF326504.1	tonoplast membrane integral protein ZmTIP3-1	-	2e+0	At1g72080	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	30	Zm.2910.1.S1_a_at	CK145276	hypothetical protein LOC100217030 /// hypothetical protein LOC100277437	-	8e+0	At5g02920	ubiquitin-protein ligase	C.G.	S.X.	Please select
0.02	3e+0	30	Zm.2910.1.S1_at	CK145276	hypothetical protein LOC100217030	-	8e+0	At5g02920	ubiquitin-protein ligase	C.G.	S.X.	Please select
0.03	3e+0	30	Zm.19158.2.S1_a_at	BM073998	hypothetical protein LOC100273021 /// thioredoxin F-type	-	3e-11	At5g16400	ATF2	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	6e+0	30	Arabidopsis thaliana	At5g40930	834094	TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4)	Form of TOM20, which is a component of the TOM complex involved in transport of nuclear-encoded mitochondrial proteins	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	5e-1	34	Glycine max	GmaAffx.53227.1.S1_at	AW755412	-	-	2e+0	At5g15800	SEP1 (SEPALLATA1)	C.G.	S.X.	Please select
0.07	1e+1	28	Hordeum vulgare	HVSMEl0002K19r2_at	HVSMEl0002K19r2	-	-	7e+0	At4g31790	diphthine synthase, putative (DPH5)	C.G.	S.X.	Please select
0.03	7e-1	34	Oryza sativa	Os04g0430900	9632.m03381	-	-	2e-13	At3g19640	magnesium transporter CorA-like family protein (MRS2-3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	8e-3	40	Populus trichocarpa	PtpAffx.76311.1.A1_at	CV236272	-	-	6e-2	At4g23885	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e+0	32	Triticum aestivum	TaAffx.113043.1.S1_at	CA618582	-	-	4e+0	At1g69600	ZFHD1 (ZINC FINGER HOMEODOMAIN 1)	C.G.	S.X.	Please select
0.04	7e+0	28	Vitis vinifera	1622771_at	CF568860	-	-	2e-2	At1g72110	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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