Gene omics information

Query gene ID	ZmAffx.807.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	ZmAffx.807.1.S1_at	AI770389	-	-	3e+0	At1g65650	UCH2	S.X.	H.G.	Please select
0.36	41.3	Zm.7685.3.A1_a_at	BM268156	-	-	4e+0	At4g27810	unknown protein	S.X.	H.G.	Please select
0.36	41.3	Zm.11668.1.A1_at	BM379837	-	-	4e+0	At1g35400	-	S.X.	H.G.	Please select
0.33	36.0	Zm.16779.1.A1_at	CF626512	hypothetical protein LOC100216924	-	2e-3	At5g48810	CB5-D (CYTOCHROME B5 ISOFORM D)	S.X.	H.G.	Please select
0.18	11.6	Zm.4083.1.A1_at	CA403575	hypothetical protein LOC100191657	-	6e-45	At5g14590	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	S.X.	H.G.	Please select
0.09	4.0	Zm.19068.1.A1_at	CO529225	hypothetical protein LOC100193338	-	1e-15	At3g20800	rcd1-like cell differentiation protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
37.0	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
34.2	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.5	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.4	99.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.0	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.6	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.1	99.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.5	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	801	ZmAffx.807.1.A1_at	AI770389	Hypothetical protein LOC100194367	-	3e+0	At1g65650	UCH2	C.G.	S.X.	Please select
0.03	9e-2	36	Zm.6915.1.S1_at	AW256266	hypothetical protein LOC100280116	-	5e-1	At5g64160	unknown protein	C.G.	S.X.	Please select
0.02	9e-2	36	Zm.52.1.A1_at	AB021175.1	root cap protein 1	-	2e+0	At5g60520	late embryogenesis abundant protein-related / LEA protein-related	C.G.	S.X.	Please select
0.01	3e-1	34	Zm.7143.1.S1_at	AF061107.1	myc transcription factor7	-	1e+0	At5g46760	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.6820.1.A1_at	AI676986	thioredoxin	-	1e-5	At3g07090	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	34	Zm.5999.1.A1_at	AI666113	-	-	3e+0	At4g17190	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2)	C.G.	S.X.	Please select
0.04	3e-1	34	Zm.4987.1.A1_at	BM380442	hypothetical protein LOC100194192	-	1e+0	At5g24830	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.01	3e-1	34	Zm.4677.1.S1_at	AY105413.1	-	-	9e-1	At3g18260	reticulon family protein (RTNLB9)	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.436.1.S1_at	AF100455.1	liguleless3	-	2e-10	At1g62360	STM (SHOOT MERISTEMLESS)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	32	Arabidopsis thaliana	At1g65650	842876	UCH2	F:ubiquitin-specific protease activity, ubiquitin thiolesterase activity;P:protein deubiquitination, shoot development, shoot morphogenesis, leaf development, ubiquitin-dependent protein catabolic process;C:nucleus, intracellular, cytoplasm;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	1e+0	34	Glycine max	GmaAffx.20876.1.S1_at	AW186056	-	-	2e+0	At5g18340	U-box domain-containing protein	C.G.	S.X.	Please select
0.05	4e-1	34	Hordeum vulgare	HVSMEa0001M07r2_at	HVSMEa0001M07r2	-	-	5e+0	At5g56320	ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14)	C.G.	S.X.	Please select
0.05	1e-1	38	Oryza sativa	Os03g0718400	AK108509.1	-	Hypothetical protein	1e+0	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.36921.1.A1_at	CV273453	hypothetical protein	-	3e+0	At3g19000	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-1	36	Triticum aestivum	TaAffx.24884.1.S1_at	CA710521	-	-	3e+0	At3g15370	ATEXPA12 (ARABIDOPSIS THALIANA EXPANSIN 12)	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1618098_at	CB979528	hypothetical protein LOC100244989	-	8e-1	At5g63135	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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