Gene omics information

Query gene ID	ZmAffx.801.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.801.1.S1_at	AI770364	-	-	3e+0	At2g02990	RNS1 (RIBONUCLEASE 1)	S.X.	H.G.	Please select
0.67	85.8	Zm.13095.1.A1_at	CA404407	hypothetical protein LOC100217092	-	1e-7	At2g04530	CPZ	S.X.	H.G.	Please select
0.55	71.6	ZmAffx.801.1.A1_at	AI770364	-	-	3e+0	At2g02990	RNS1 (RIBONUCLEASE 1)	S.X.	H.G.	Please select
0.50	65.7	Zm.9469.1.A1_at	BM269128	-	-	2e+1	At3g21610	-	S.X.	H.G.	Please select
0.33	36.0	ZmAffx.553.1.A1_at	AI712209	-	-	3e+0	At4g38850	SAUR15 (SMALL AUXIN UPREGULATED 15)	S.X.	H.G.	Please select
0.18	11.6	ZmAffx.175.1.A1_at	AI668276	-	-	3e+0	At3g06820	mov34 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.9	99.8	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.2	99.8	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.2	99.7	GSM320470	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.6	99.7	GSM320469	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.4	99.7	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.0	99.5	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.2	99.5	GSM320473	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.4	99.5	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.7	99.3	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	801	ZmAffx.801.1.A1_at	AI770364	-	-	3e+0	At2g02990	RNS1 (RIBONUCLEASE 1)	C.G.	S.X.	Please select
0.17	4e-7	54	Zm.14877.1.S1_at	CB179260	-	-	1e+0	At1g59700	ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16)	C.G.	S.X.	Please select
0.12	1e-3	42	Zm.13927.1.A1_at	U41079.1	-	-	1e+0	At3g47295	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.3055.1.A1_at	CA398521	dihydroflavonol-4-reductase	-	2e+0	At5g01910	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.122.1.S1_at	AY105634.1	malate dehydrogenase6	-	9e-13	At5g58330	malate dehydrogenase (NADP), chloroplast, putative	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.681.1.A1_at	AY029313.1	barley mlo defense gene homolog2	-	4e-6	At2g17480	MLO8 (MILDEW RESISTANCE LOCUS O 8)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.6653.1.S1_at	CA404358	hypothetical protein LOC100274393	-	6e-4	At5g54680	ILR3 (iaa-leucine resistant3)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.5787.1.A1_at	AI714879	-	-	1e-5	At2g17390	AKR2B (ANKYRIN REPEAT-CONTAINING 2B)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.4944.1.S1_at	AF272752.1	kinesin-like protein4	-	1e-10	At2g36200	kinesin motor protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At2g02990	814828	RNS1 (RIBONUCLEASE 1)	member of the ribonuclease T2 family, responds to inorganic phosphate starvation, and inhibits production of anthocyanin. Also involved in wound-induced signaling independent of jasmonic acid.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e+0	34	Glycine max	HgAffx.9877.1.S1_at	CB378624	-	-	1e+0	At1g11540	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	EBem06_SQ003_C15_x_at	EBem06_SQ003_C15	-	-	9e-1	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.05	2e+0	34	Oryza sativa	OsAffx.29729.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.155464.1.A1_at	CK095153	-	-	1e+1	At5g20070	ATNUDX19 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	5e-2	38	Triticum aestivum	TaAffx.112111.1.S1_at	CA626572	-	-	4e+0	At4g28485	unknown protein	C.G.	S.X.	Please select
0.04	6e-2	36	Vitis vinifera	1612564_at	CF207502	-	-	2e-32	At5g37020	ARF8 (AUXIN RESPONSE FACTOR 8)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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