CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID ZmAffx.799.1.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 88.2 ZmAffx.799.1.A1_at AI770347 - - 5e-2 At1g75080 BZR1 (BRASSINAZOLE-RESISTANT 1) S.X. H.G.
0.48 61.3 ZmAffx.1106.1.S1_at AW216267 - - 3e-3 At1g60550 ECHID (ENOYL-COA HYDRATASE/ISOMERASE D) S.X. H.G.
0.46 58.4 Zm.13931.1.A1_x_at Z35302.1 - - 8e-1 At1g09630 ATRAB11C (ARABIDOPSIS RAB GTPASE 11C) S.X. H.G.
0.44 55.7 ZmAffx.831.1.A1_at AI770541 Hypothetical protein LOC100191667 - 2e-1 At1g21900 emp24/gp25L/p24 family protein S.X. H.G.
0.42 51.3 ZmAffx.482.1.S1_at AI691285 - - 3e+0 At5g57510 unknown protein S.X. H.G.
0.40 48.5 Zm.17669.1.A1_at AY104632.1 - - 3e+0 At1g79790 haloacid dehalogenase-like hydrolase family protein S.X. H.G.
0.33 36.0 ZmAffx.897.1.S1_at AI770885 - - 2e-1 At2g12170 unknown protein S.X. H.G.
0.32 33.4 Zm.7023.2.A1_at AI734540 - - 9e-1 At2g27250 CLV3 (CLAVATA3) S.X. H.G.
0.32 33.4 Zm.3283.2.A1_a_at BM335982 hypothetical protein LOC100192072 - 2e+0 At3g46110 unknown protein S.X. H.G.
0.30 29.8 Zm.1085.4.A1_at BM349000 - - 7e-9 At1g55670 PSAG (PHOTOSYSTEM I SUBUNIT G) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.7 99.6 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.7 99.5 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.4 99.5 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.6 99.5 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.7 99.4 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.0 99.2 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.2 99.2 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.0 99.2 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.5 99.0 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2 98.0 GSM320465 protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 807 ZmAffx.799.1.S1_at AI770347 hypothetical protein LOC100275354 - 5e-2 At1g75080 BZR1 (BRASSINAZOLE-RESISTANT 1) C.G. S.X.
0.02 4e-4 44 Zm.2742.1.A1_at AY111235.1 formaldehyde dehydrogenase homolog1 - 6e-57 At5g43940 HOT5 (sensitive to hot temperatures 5) C.G. S.X.
0.03 4e-4 44 Zm.16475.2.S1_at CK371021 - - 2e-7 At2g30260 U2B'' (U2 small nuclear ribonucleoprotein B) C.G. S.X.
0.02 5e-3 40 Zm.4870.1.A1_a_at CK985786 dehydrin - 7e-4 At3g50980 XERO1 (DEHYDRIN XERO 1) C.G. S.X.
0.02 5e-3 40 Zm.4870.1.A1_x_at CK985786 dehydrin - 7e-4 At3g50980 XERO1 (DEHYDRIN XERO 1) C.G. S.X.
0.02 5e-3 40 Zm.4870.2.S1_a_at CF023956 dehydrin - 3e-6 At3g50980 XERO1 (DEHYDRIN XERO 1) C.G. S.X.
0.04 2e-2 38 Zm.9922.1.A1_at BM349085 - - 1e-3 At3g59060 PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) C.G. S.X.
0.02 2e-2 38 Zm.9966.1.A1_at AY107742.1 hypothetical protein LOC100191214 - 1e-42 At2g32980 unknown protein C.G. S.X.
0.02 2e-2 38 Zm.9742.1.A1_at BU099018 hypothetical protein LOC100274643 - 3e+0 At5g01380 transcription factor C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-2 38 Arabidopsis thaliana At1g75080 843845 BZR1 (BRASSINAZOLE-RESISTANT 1) Encodes a positive regulator of the brassinosteroid (BR) signalling pathway that mediates both downstream BR responses and negative feedback regulation of BR biosynthesis. There is evidence for phosphorylation-dependent nucleocytoplasmic shuttling of BZR1. GSK3-like kinases (including BIN2), 14-3-3 proteins, and the phosphatase BSU1 seem to participate in this process. Phosphorylation also appears to affect BZR1's transcriptional activities. - - - C.G. S.X.
0.06 7e-2 38 Glycine max GmaAffx.64568.1.S1_at BE800504 GT-1 - 2e-1 At5g46795 MSP2 (microspore-specific promoter 2) C.G. S.X.
0.03 2e-2 38 Hordeum vulgare Contig16874_at Contig16874 - - 6e+0 At5g67010 AP2 domain-containing transcription factor, putative C.G. S.X.
0.08 8e-21 101 Oryza sativa Os04g0539500 AK060574.1 - AtGATA-3 protein (GATA transcription factor 3) 4e-9 At5g66320 zinc finger (GATA type) family protein C.G. S.X.
0.04 2e-2 40 Populus trichocarpa PtpAffx.121329.1.A1_at CV243976 hypothetical protein - 1e-1 At5g43150 unknown protein C.G. S.X.
0.12 3e-19 95 Triticum aestivum TaAffx.51406.1.S1_at CA600281 - - 1e-1 At5g13910 LEP (LEAFY PETIOLE) C.G. S.X.
0.04 9e-1 32 Vitis vinifera 1609470_at CF203556.1 - - 4e-1 At5g64620 C/VIF2 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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