Gene omics information

Query gene ID	ZmAffx.788.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	ZmAffx.788.1.A1_at	AI759113	-	-	8e-1	At4g33925	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.10571.1.A1_at	BQ538363	hypothetical protein LOC100216835	-	3e-1	At3g60360	EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14)	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.70.1.A1_at	AI665164	-	-	8e-1	At2g37780	DC1 domain-containing protein	S.X.	H.G.	Please select
0.44	55.7	Zm.4230.1.S1_at	CO523811	-	-	4e-5	At1g17650	GLYR2 (GLYOXYLATE REDUCTASE 2)	S.X.	H.G.	Please select
0.36	41.3	Zm.301.2.A1_at	CO521836	hypothetical protein LOC100276367	-	4e-9	At2g34510	-	S.X.	H.G.	Please select
0.33	36.0	Zm.48.1.S1_at	D31905.1	mgp1 GTP-binding protein	-	6e-25	At5g60860	AtRABA1f (Arabidopsis Rab GTPase homolog A1f)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.7	99.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.9	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.7	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.4	99.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.2	99.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.8	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.788.1.S1_at	AI759113	-	-	8e-1	At4g33925	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.8719.1.A1_at	BM332824	hypothetical protein LOC100275009	-	6e+0	At4g34770	auxin-responsive family protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.5850.1.A1_at	CF623894	-	-	2e-7	At4g04910	NSF (N-ethylmaleimide sensitive factor)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.4169.1.A1_at	AY106935.1	hypothetical protein LOC100217197	-	6e-4	At4g36290	ATP-binding region, ATPase-like domain-containing protein	C.G.	S.X.	Please select
0.04	1e+0	32	Zm.3689.1.A1_at	AW042272	-	-	5e-2	At5g28770	BZO2H3	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.815.1.S1_at	CF626555	ethylene response element binding protein	-	6e-8	At3g14230	RAP2.2	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.6225.1.A1_at	CB251995	hypothetical protein LOC100274530	-	1e-10	At1g23290	RPL27AB	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.3050.1.A1_a_at	AW120155	ras-related protein Rab-18	-	7e-6	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.2972.1.A1_at	BM073882	-	-	4e-3	At3g01810	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	8e-1	34	Arabidopsis thaliana	At4g33925	829537	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPAOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.84688.1.S1_at	AI460889	-	-	5e-24	At4g14240	-	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	Contig19608_at	Contig19608	-	-	8e-1	At5g16050	GRF5 (GENERAL REGULATORY FACTOR 5)	C.G.	S.X.	Please select
0.02	2e+0	34	Oryza sativa	Os12g0250700	AK069277.1	-	-	6e-1	At3g16960	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Populus trichocarpa	PtpAffx.82485.1.A1_at	CV244571	-	-	7e-39	At2g47110	UBQ6	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	8e-1	34	Triticum aestivum	TaAffx.5125.1.S1_at	CA721149	-	-	3e-34	At2g47110	UBQ6	C.G.	S.X.	Please select
0.04	2e-1	34	Vitis vinifera	1607402_at	CD800723	-	-	8e-11	At2g31530	EMB2289 (EMBRYO DEFECTIVE 2289)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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