CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID ZmAffx.786.1.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 ZmAffx.786.1.A1_at AI759096 - - 3e-3 At1g72450 JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6) S.X. H.G.
0.83 95.6 Zm.4625.1.A1_at AI737394 - - 8e-1 At1g78630 emb1473 (embryo defective 1473) S.X. H.G.
0.67 85.8 Zm.8375.1.A1_at BM080176 - - 2e-2 At5g25450 ubiquinol-cytochrome C reductase complex 14 kDa protein, putative S.X. H.G.
0.67 85.8 ZmAffx.925.1.S1_at AI795348 - - 8e-1 At1g43171 unknown protein S.X. H.G.
0.55 71.6 Zm.9555.2.A1_at CK347442 - - 3e+0 At2g22241 unknown protein S.X. H.G.
0.50 65.7 Zm.9891.1.A1_at BM350582 - - 1e+0 At5g27290 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.5 98.8 GSM253281 ZM_8d_SG200_3Alu_II GSE10023 Maize gene expression during infection with Ustilago maydis
11.0 98.5 GSM253282 ZM_8d_SG200_3Alu_III GSE10023 Maize gene expression during infection with Ustilago maydis
10.3 98.4 GSM253280 ZM_8d_SG200_3Alu_I GSE10023 Maize gene expression during infection with Ustilago maydis
5.2 96.9 GSM206313 Upper pulvinus 5 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.2 96.9 GSM320443 protocol: mRNA - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6 96.4 GSM206300 Upper pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.1 95.9 GSM206319 Lower pulvinus 5 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.9 95.7 GSM206325 Upper pulvinus 5 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.9 95.7 GSM206299 Left pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.6 95.2 GSM206301 Upper pulvinus 5 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.79 0 634 ZmAffx.786.1.S1_at AI759096 - - 3e-3 At1g72450 JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6) C.G. S.X.
0.03 1e+0 32 Zm.832.1.A1_at AY107728.1 hypothetical protein LOC100275137 - 1e+0 At1g54140 TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) C.G. S.X.
0.03 1e+0 32 Zm.832.1.S1_at AY107728.1 - - 1e+0 At1g54140 TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) C.G. S.X.
0.02 1e+0 32 Zm.16510.1.A1_at CK347176 - - 8e-10 At1g77380 AAP3 C.G. S.X.
0.04 5e+0 30 ZmAffx.832.1.A1_at AI770560 - - 5e-2 At5g51990 CBF4 (C- REPEAT-BINDING FACTOR 4) C.G. S.X.
0.04 5e+0 30 ZmAffx.832.1.S1_at AI770560 hypothetical protein LOC100274340 - 5e-2 At5g51990 CBF4 (C- REPEAT-BINDING FACTOR 4) C.G. S.X.
0.03 5e+0 30 Zm.9369.1.A1_at BM340966 Hypothetical protein LOC100193678 - 3e-1 At1g74520 ATHVA22A C.G. S.X.
0.04 5e+0 30 Zm.9001.1.A1_a_at CO534924 heavy metal-associated domain containing protein - 5e+0 At5g05300 unknown protein C.G. S.X.
0.04 5e+0 30 Zm.9001.1.A1_x_at CO534924 heavy metal-associated domain containing protein - 5e+0 At5g05300 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-3 42 Arabidopsis thaliana At1g72450 843577 JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6) JAZ6 transcript levels rise in response to a jasmonate stimulus and a GFP:JAZ6 fusion protein localizes to the nucleus. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ6:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. - - - C.G. S.X.
0.04 4e+0 32 Glycine max GmaAffx.71441.1.S1_s_at AW733936 - - 3e+0 At4g17240 unknown protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare EBem10_SQ004_F01_s_at EBem10_SQ004_F01 - - 7e-1 At3g48240 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein C.G. S.X.
0.12 3e-2 40 Oryza sativa Os06g0155300 AK099462.1 - IQ calmodulin-binding region domain containingprotein 5e-2 At3g15050 IQD10 (IQ-domain 10) C.G. S.X.
0.03 1e+0 34 Populus trichocarpa PtpAffx.215678.1.S1_at pmrna30024 hypothetical protein - 3e-1 At4g25220 transporter, putative C.G. S.X.
0.05 3e+0 32 Triticum aestivum TaAffx.121275.1.A1_at BG905843 - - 1e-1 At1g13620 unknown protein C.G. S.X.
0.04 4e+0 30 Vitis vinifera 1618024_at CF568871 - - 2e-14 At1g23800 ALDH2B7 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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