Gene omics information

Query gene ID	ZmAffx.783.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.783.1.S1_at	AI745854	-	-	8e-7	At1g51730	RWD domain-containing protein	S.X.	H.G.	Please select
0.15	8.6		-	-	-	0			S.X.	H.G.	Please select
0.03	1.1	Zm.5003.2.A1_x_at	CO518270	-	-	9e-2	At4g25570	ACYB-2	S.X.	H.G.	Please select
0.02	0.7	Zm.11629.1.A1_at	BM379422	hypothetical protein LOC100272434	-	3e-1	At4g18620	-	S.X.	H.G.	Please select
0.01	0.3	Zm.19317.1.S1_at	CO521190	tesmin/TSO1-like CXC domain containing protein	-	5e-2	At4g29000	tesmin/TSO1-like CXC domain-containing protein	S.X.	H.G.	Please select
0.01	0.3	Zm.15629.1.S1_at	CD441270	-	-	9e-4	At3g04590	DNA-binding family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.2	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.0	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.3	99.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.5	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.1	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.1	99.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.1	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.6	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	775	ZmAffx.783.1.A1_s_at	AI745854	nucleolin	-	8e-7	At1g51730	RWD domain-containing protein	C.G.	S.X.	Please select
0.03	9e-8	56	Zm.837.1.A1_at	BG320171	hypothetical protein LOC100272396	-	1e-40	At4g21660	proline-rich spliceosome-associated (PSP) family protein	C.G.	S.X.	Please select
0.03	4e-4	44	Zm.7784.1.S1_at	BM079884	eukaryotic translation initiation factor 3 subunit 1 alpha, 35kDa	-	4e-2	At3g24506	unknown protein	C.G.	S.X.	Please select
0.03	1e-3	42	Zm.990.1.A1_at	CF636054	-	-	1e+1	At5g44345	F-box family protein-related	C.G.	S.X.	Please select
0.02	1e-3	42	Zm.919.1.S1_at	BE509982	-	-	3e+0	At3g58850	PAR2 (PHY RAPIDLY REGULATED 2)	C.G.	S.X.	Please select
0.03	1e-3	42	Zm.4536.1.S1_at	CF348908	kinesin heavy chain isolog	-	7e-4	At1g20220	nucleic acid binding	C.G.	S.X.	Please select
0.02	1e-3	42	Zm.16988.1.A1_at	L10634.1	beta-7 tubulin	-	4e-117	At5g23860	TUB8	C.G.	S.X.	Please select
0.03	1e-3	42	Zm.14039.3.S1_a_at	AF113521.1	plasminogen activator inhibitor 1 RNA-binding protein	-	2e-3	At4g16830	nuclear RNA-binding protein (RGGA)	C.G.	S.X.	Please select
0.02	1e-3	42	Zm.14039.1.A2_a_at	CF003126	plasminogen activator inhibitor 1 RNA-binding protein	-	4e-3	At4g16830	nuclear RNA-binding protein (RGGA)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	8e-7	54	Arabidopsis thaliana	At1g51730	841598	RWD domain-containing protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	1e-3	44	Glycine max	HgAffx.19394.1.S1_at	CA939786	-	-	2e-1	At5g28630	glycine-rich protein	C.G.	S.X.	Please select
0.06	3e-2	38	Hordeum vulgare	EBro08_SQ003_C15_at	EBro08_SQ003_C15	-	-	2e-2	At3g21850	ASK9 (ARABIDOPSIS SKP1-LIKE 9)	C.G.	S.X.	Please select
0.06	4e-4	46	Oryza sativa	Os.56894.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	3e-4	46	Populus trichocarpa	PtpAffx.202698.1.S1_at	pmrna5391	hypothetical protein	-	6e-2	At5g40730	AGP24	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	1e-52	206	Triticum aestivum	Ta.17154.1.S1_at	CA618245	-	-	5e-1	At5g67010	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.11	2e-4	44	Vitis vinifera	1608560_at	CF405443	hypothetical protein LOC100250989	-	3e+0	At3g09890	ankyrin repeat family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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