Gene omics information

Query gene ID	ZmAffx.777.1.A1_at
Gene name	hypothetical protein LOC100191464
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	90.3	ZmAffx.777.1.A1_at	AI746253	hypothetical protein LOC100191464	-	2e-1	At5g11440	CID5	S.X.	H.G.	Please select
0.65	82.1	Zm.1519.1.S1_at	AF033263.1	blue-light receptor phototropin 1	-	5e-16	At3g45780	PHOT1 (PHOTOTROPIN 1)	S.X.	H.G.	Please select
0.63	81.1	Zm.7644.2.S1_at	BM341428	-	-	4e+0	At5g23760	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.59	76.1	Zm.17862.1.A1_at	CO520595	serine/threonine-protein kinase WNK4	-	5e+0	At4g09440	unknown protein	S.X.	H.G.	Please select
0.54	69.8	Zm.19120.1.A1_at	CO523709	hypothetical protein LOC100272621	-	4e-7	At3g20810	transcription factor jumonji (jmjC) domain-containing protein	S.X.	H.G.	Please select
0.50	65.7	Zm.12377.1.S1_at	BQ577907	-	-	1e+1	At3g10915	reticulon family protein	S.X.	H.G.	Please select
0.48	61.3	Zm.5101.1.S1_at	AY110556.1	hypothetical protein LOC100193724	-	1e-3	At3g01300	protein kinase, putative	S.X.	H.G.	Please select
0.46	58.4	Zm.494.2.S1_at	BE056113	Prohibitin1	-	3e+0	At5g17510	unknown protein	S.X.	H.G.	Please select
0.46	58.4	Zm.15975.1.A1_at	AY109347.1	-	-	5e-2	At4g17560	ribosomal protein L19 family protein	S.X.	H.G.	Please select
0.46	58.4	Zm.2169.1.A1_at	BM079581	-	-	2e+0	At3g10250	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.0	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.6	97.1	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.777.1.S1_at	AI746253	Hypothetical protein LOC100191464	-	2e-1	At5g11440	CID5	C.G.	S.X.	Please select
0.07	2e-2	38	Zm.2407.1.A1_a_at	BM073394	hypothetical protein LOC100191492	-	6e+0	At5g19370	rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein	C.G.	S.X.	Please select
0.09	9e-2	36	Zm.18447.1.A1_at	CO530736	hypothetical protein LOC100217021	-	3e-1	At5g58540	protein kinase family protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.4340.1.A1_at	M76685.1	orange pericarp2	-	2e-29	At4g27070	TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.13107.1.S1_at	CD438929	-	-	6e+0	At5g35375	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.10716.1.S1_at	BQ539187	-	-	2e+0	At5g15750	RNA-binding S4 domain-containing protein	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.8959.1.A1_at	BM335622	-	-	5e-3	At3g18350	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.701.1.A1_a_at	CA403934	26S proteasome non-ATPase regulatory subunit 3 /// 26S proteasome non-ATPase regulatory subunit 3	-	2e-8	At1g75990	26S proteasome regulatory subunit S3, putative (RPN3)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.5463.1.A1_at	AY104268.1	prolyl-tRNA synthetase	-	4e-80	At5g52520	OVA6 (OVULE ABORTION 6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-1	36	Arabidopsis thaliana	At5g11440	831015	CID5	Interacts with PAB (poly A binding protein) in yeast two hybrid experiments. Contains PAM2 motif, a PABC interacting domain.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	2e-5	50	Glycine max	Gma.5761.1.S1_at	BI785568	-	-	1e-2	At3g56050	protein kinase family protein	C.G.	S.X.	Please select
0.47	9e-33	139	Hordeum vulgare	Contig20810_at	Contig20810	-	-	1e+0	At5g06070	RBE (RABBIT EARS)	C.G.	S.X.	Please select
0.16	1e-44	180	Oryza sativa	Os01g0674800	AK059169.1	-	Protein kinase domain containing protein	8e-8	At5g45840	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e+0	32	Populus trichocarpa	PtpAffx.209989.1.S1_at	pmrna19705	hypothetical protein	-	2e+0	At2g46535	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	5e-2	38	Triticum aestivum	Ta.17080.1.S1_at	CA617376	-	-	2e+0	At3g05685	-	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1612146_at	CB347474	-	-	1e+1	At5g51360	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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