Gene omics information

Query gene ID	ZmAffx.774.1.A1_at
Gene name	hypothetical protein LOC100279501
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.774.1.A1_at	AI746198	hypothetical protein LOC100279501	-	2e+0	At2g41000	heat shock protein binding	S.X.	H.G.	Please select
0.57	75.1	Zm.2763.1.S1_at	AW067129	hypothetical protein LOC100191545	-	9e-7	At1g19710	glycosyl transferase family 1 protein	S.X.	H.G.	Please select
0.55	71.6	Zm.13940.1.S1_at	AI677337	hypothetical protein LOC100193246	-	1e+0	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	S.X.	H.G.	Please select
0.40	48.5	Zm.6275.1.S1_a_at	AF540907.1	benzoxazin6	-	7e-1	At1g06640	2-oxoglutarate-dependent dioxygenase, putative	S.X.	H.G.	Please select
0.36	41.3	ZmAffx.1299.1.S1_at	40794996-27	-	-	0	Atmg00580	-	S.X.	H.G.	Please select
0.27	24.6	Zm.8664.1.A1_at	BM338299	hypothetical protein LOC100274639	-	2e+0	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.2	99.5	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
17.4	99.1	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
15.1	98.9	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
13.2	98.8	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
11.0	98.5	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
10.4	98.4	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.0	98.2	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
8.8	98.1	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.0	98.0	GSM205366	B73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
8.0	98.0	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-1	32	Zm.98.1.S1_at	AY106729.1	3-phosphoshikimate 1-carboxyvinyltransferase	-	2e-48	At1g48860	3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative	C.G.	S.X.	Please select
0.04	7e-1	32	Zm.18546.1.A1_at	CO529631	hypothetical protein LOC100276680	-	9e-2	At3g12660	FLA14 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14 PRECURSOR)	C.G.	S.X.	Please select
0.02	3e+0	30	Zm.292.1.S1_at	L46397.1	MADS box protein	-	2e-7	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select
0.04	3e+0	30	Zm.2478.2.A1_at	AI737453	Hypothetical protein LOC100191471	-	7e-2	At5g60490	FLA12	C.G.	S.X.	Please select
0.05	3e+0	30	Zm.1662.2.A1_x_at	AW574474	-	-	2e-1	At3g54340	AP3 (APETALA 3)	C.G.	S.X.	Please select
0.02	3e+0	30	Zm.10039.2.A1_at	BM378276	-	-	2e-4	At5g58470	TAF15b (TBP-ASSOCIATED FACTOR 15b)	C.G.	S.X.	Please select
0.02	3e+0	30	Zm.10039.2.S1_at	BM339927	-	-	2e-4	At5g58470	TAF15b (TBP-ASSOCIATED FACTOR 15b)	C.G.	S.X.	Please select
0.02	1e+1	28	Zm.9031.1.S1_at	CD441372	chloroplast Cu-Zn superoxide dismutase	-	8e-37	At2g28190	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	C.G.	S.X.	Please select
0.03	1e+1	28	Zm.8709.1.A1_at	CF624906	-	-	6e-6	At1g01650	aspartic-type endopeptidase/ peptidase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+0	32	Arabidopsis thaliana	At2g41000	818700	heat shock protein binding	F:heat shock protein binding;P:protein folding;C:unknown;BOMFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	9e+0	30	Glycine max	HgAffx.8733.1.S1_at	CB379768	-	-	1e+0	At5g11190	SHN3 (shine3)	C.G.	S.X.	Please select
0.06	3e+0	30	Hordeum vulgare	HVSMEm0007C03f_at	HVSMEm0007C03f	-	-	2e+0	Atcg01020	-	C.G.	S.X.	Please select
0.03	3e+0	32	Oryza sativa	Os03g0624100	9631.m04098	-	Hypothetical protein	9e-2	At5g63480	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e-1	36	Populus trichocarpa	PtpAffx.76480.1.A1_at	CV228523	-	-	9e-1	At1g23950	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	7e+0	30	Triticum aestivum	TaAffx.32293.1.S1_at	CA597492	-	-	5e-2	At3g04660	F-box family protein	C.G.	S.X.	Please select
0.04	2e+0	30	Vitis vinifera	1616548_at	CD006761	-	-	8e-5	At3g04260	PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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