Gene omics information

Query gene ID	ZmAffx.772.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	90.8	ZmAffx.772.1.S1_at	AI746167	-	-	3e+0	At1g30840	ATPUP4	S.X.	H.G.	Please select
0.67	85.8	Zm.5093.1.A1_at	AI600800	GAGA-binding protein	-	4e-4	At1g14685	BPC2 (BASIC PENTACYSTEINE 2)	S.X.	H.G.	Please select
0.63	81.1	Zm.18133.1.A1_at	AY103981.1	-	-	8e-38	At1g78570	RHM1 (RHAMNOSE BIOSYNTHESIS 1)	S.X.	H.G.	Please select
0.57	75.1	Zm.18125.1.S1_at	CN844337	-	-	4e-1	At3g47380	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.56	74.4	Zm.10538.1.A1_at	BQ538177	-	-	6e-7	At3g59830	ankyrin protein kinase, putative	S.X.	H.G.	Please select
0.56	74.4	Zm.5180.1.A1_at	AI612313	-	-	1e+1	At5g27090	AGL54	S.X.	H.G.	Please select
0.55	71.6	Zm.2997.1.S1_at	CD983066	REX1 DNA Repair family protein	-	6e+0	At5g35525	unknown protein	S.X.	H.G.	Please select
0.52	67.3	Zm.17660.1.S1_at	AY106360.1	-	-	4e-1	At4g39720	VQ motif-containing protein	S.X.	H.G.	Please select
0.49	61.9	Zm.4271.4.A1_at	BG316519	hypothetical protein LOC100273684	-	6e-5	At1g02690	IMPA-6 (IMPORTIN ALPHA ISOFORM 6)	S.X.	H.G.	Please select
0.47	59.9	Zm.18374.1.A1_at	CO521737	hypothetical protein LOC100191144	-	1e-1	At1g21890	nodulin MtN21 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.5	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.3	99.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.9	99.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.6	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.2	99.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.6	99.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.772.1.A1_at	AI746167	-	-	3e+0	At1g30840	ATPUP4	C.G.	S.X.	Please select
0.01	9e-2	36	Zm.14137.1.S1_at	BE345482	hypothetical protein LOC100272808	-	2e-36	At3g18660	PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1)	C.G.	S.X.	Please select
0.03	3e-1	34	Zm.4713.1.A1_at	AI738137	-	-	8e-2	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.7342.1.A1_at	AF371279.1	legumin1	-	4e+0	At5g23100	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.5538.1.A1_at	AY108866.1	hypothetical protein LOC100272706	-	2e-1	At2g34070	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.3490.1.A1_at	CK371495	arginine/serine-rich splicing factor RSP41	-	2e+0	At2g46610	arginine/serine-rich splicing factor, putative	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.13455.1.A1_at	CO529632	hypothetical protein LOC100217085	-	4e-2	At5g14400	CYP724A1	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.8720.1.S1_at	AY303682.1	UDP-glucose-4-epimerase	-	9e-7	At4g23920	UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.8720.2.A1_a_at	BM267300	UDP-glucose-4-epimerase	-	5e+0	At5g16486	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	32	Arabidopsis thaliana	At1g30840	839967	ATPUP4	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	GmaAffx.24874.1.S1_at	CA935208	-	-	3e+0	At3g28950	avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related	C.G.	S.X.	Please select
0.04	6e+0	30	Hordeum vulgare	HV_CEa0009O11f2_x_at	HV_CEa0009O11f2	-	-	2e+0	At1g15757	-	C.G.	S.X.	Please select
0.06	2e+0	34	Oryza sativa	Os10g0171200	9640.m03887	-	-	2e+0	At2g42660	myb family transcription factor	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e+0	32	Populus trichocarpa	PtpAffx.210616.1.S1_at	pmrna20826	hypothetical protein	-	2e-2	At3g48425	endonuclease/exonuclease/phosphatase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	TaAffx.51609.1.S1_at	CA722993	-	-	5e-2	At5g56840	DNA-binding family protein	C.G.	S.X.	Please select
0.03	9e-1	32	Vitis vinifera	1607251_at	CF413800	hypothetical protein LOC100264817	-	3e-19	At4g31720	TAFII15 (TBP-ASSOCIATED FACTOR II 15)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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