Gene omics information

Query gene ID	ZmAffx.760.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.89	96.8	ZmAffx.760.1.A1_at	AI734521	-	-	1e+1	At5g42591	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.3592.1.S1_at	CA401155	-	-	1e+1	At5g57230	-	S.X.	H.G.	Please select
0.21	15.5	Zm.12015.1.A1_at	AY107802.1	-	-	5e-6	At2g26910	PDR4 (PLEIOTROPIC DRUG RESISTANCE 4)	S.X.	H.G.	Please select
0.17	10.6	ZmAffx.406.13.S1_at	AI670444	-	-	5e+0	At2g40316	unknown protein	S.X.	H.G.	Please select
0.12	5.9	ZmAffx.199.1.S1_at	AI668491	-	-	7e-1	At1g14687	AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32)	S.X.	H.G.	Please select
0.11	5.3	Zm.17344.1.S1_at	CK370586	-	-	4e+0	At4g34050	caffeoyl-CoA 3-O-methyltransferase, putative	S.X.	H.G.	Please select
0.10	4.6	Zm.6069.1.A1_a_at	AY104047.1	-	-	1e-17	At2g41840	40S ribosomal protein S2 (RPS2C)	S.X.	H.G.	Please select
0.09	4.0	Zm.943.1.A1_at	BF729547	CID11	-	1e+0	At5g42240	scpl42 (serine carboxypeptidase-like 42)	S.X.	H.G.	Please select
0.07	2.9	Zm.13245.1.S1_at	AF450481.1	CBF3-like protein	-	2e+0	At3g22800	leucine-rich repeat family protein / extensin family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.3	98.2	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
7.7	97.9	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
7.0	97.7	GSM205366	B73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
6.4	97.5	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
6.0	97.3	GSM205370	B73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.8	97.2	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.6	97.1	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.3	96.9	GSM205367	Mo17xB73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.8	96.6	GSM205368	B73xMo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.3	96.1	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	5e-13	73	Zm.10393.1.A1_at	BQ163144	-	-	2e+0	At5g11425	unknown protein	C.G.	S.X.	Please select
0.08	5e-13	73	Zm.10393.1.S1_at	AI676981	-	-	2e+0	At5g11425	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	ZmAffx.308.1.A1_at	AI670395	-	-	2e-1	At5g49520	WRKY48	C.G.	S.X.	Please select
0.04	2e+0	32	ZmAffx.308.1.S1_at	AI670395	-	-	2e-1	At5g49520	WRKY48	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.13465.1.A1_at	AY109099.1	hypothetical protein LOC100274229	-	3e+0	At5g25460	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Zm.13186.1.S1_at	CA408939	-	-	1e+0	At5g58520	protein kinase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.12242.1.A1_at	BM080779	-	-	1e-2	At1g73150	GTE3 (GLOBAL TRANSCRIPTION FACTOR GROUP E 3)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.10343.1.S1_at	AF443596.1	enhancer of zeste1	-	5e-56	At2g23380	CLF (CURLY LEAF)	C.G.	S.X.	Please select
0.01	6e+0	30	Zm.5050.1.S1_at	AF016305.1	ATP sulfurylase	-	1e-21	At3g22890	APS1 (ATP SULFURYLASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e+1	30	Arabidopsis thaliana	At5g42591	6241178	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e+0	32	Glycine max	GmaAffx.88429.1.S1_at	BG043801	-	-	3e-4	At5g52900	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig24842_at	Contig24842	-	-	5e+0	At5g22360	ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714)	C.G.	S.X.	Please select
0.05	2e+0	34	Oryza sativa	Os.57467.1.A1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	32	Populus trichocarpa	PtpAffx.94698.1.A1_at	CV275048	-	-	1e+0	At5g49120	senescence-associated protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	Ta.10197.1.S1_at	BJ243405	-	-	2e-1	At5g65410	HB25 (HOMEOBOX PROTEIN 25)	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1620189_at	CF512495	hypothetical protein LOC100265424	-	6e-30	At3g08840	D-alanine--D-alanine ligase family	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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